Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 120.20635 * 80.55612 * 3 2 1 5 5 C 1.37796 * 119.91802 * 180.02562 * 4 3 2 6 6 C 1.38572 * 120.34678 * 359.97438 * 5 4 3 7 7 C 1.38015 * 120.42133 * 0.02562 * 6 5 4 8 8 C 1.38888 * 120.06689 * 359.71253 * 7 6 5 9 9 N 1.39032 * 120.16830 * 180.28227 * 8 7 6 10 10 C 1.46501 * 120.00281 * 0.28304 * 9 8 7 11 11 C 1.52994 * 109.47106 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47088 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99921 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47301 * 59.99649 * 17 15 13 19 19 H 1.48503 * 109.47197 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47072 * 299.99921 * 17 15 13 21 21 H 1.08001 * 120.04427 * 359.97438 * 4 3 2 22 22 H 1.08008 * 119.82908 * 179.97438 * 5 4 3 23 23 H 1.07996 * 119.78644 * 179.97438 * 6 5 4 24 24 H 1.08000 * 119.96312 * 180.02562 * 7 6 5 25 25 H 0.97004 * 120.00087 * 180.27617 * 9 8 7 26 26 H 1.08998 * 109.46715 * 299.99546 * 10 9 8 27 27 H 1.08996 * 109.46917 * 59.99467 * 10 9 8 28 28 H 1.09004 * 109.47463 * 299.99908 * 11 10 9 29 29 H 1.09002 * 109.47684 * 59.99711 * 11 10 9 30 30 H 1.08999 * 109.47395 * 299.99720 * 12 11 10 31 31 H 1.08997 * 109.47201 * 60.00127 * 12 11 10 32 32 H 0.96995 * 119.99854 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.1972 -1.1911 5 6 4.6490 -0.1959 -1.1842 6 6 5.3430 0.0012 -0.0011 7 6 4.6628 0.1979 1.1836 8 6 3.2740 0.2054 1.1957 9 7 2.5868 0.4093 2.3870 10 6 3.3275 0.6231 3.6327 11 6 2.3409 0.8208 4.7852 12 6 3.1145 1.0434 6.0863 13 6 2.1426 1.2388 7.2214 14 1 1.0795 1.2070 7.0337 15 6 2.6107 1.4573 8.4998 16 7 3.9052 1.4946 8.7287 17 14 1.4061 1.6988 9.9069 18 1 0.5511 0.4919 10.0392 19 1 2.1570 1.9150 11.1697 20 1 0.5526 2.8821 9.6303 21 1 2.7352 -0.3517 -2.1160 22 1 5.1910 -0.3494 -2.1057 23 1 6.4229 0.0000 -0.0060 24 1 5.2112 0.3512 2.1013 25 1 1.6167 0.4101 2.3933 26 1 3.9548 -0.2449 3.8359 27 1 3.9542 1.5095 3.5352 28 1 1.7138 1.6889 4.5818 29 1 1.7138 -0.0654 4.8829 30 1 3.7412 0.1751 6.2895 31 1 3.7417 1.9295 5.9890 32 1 4.2345 1.6486 9.6279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 34.813757 kcal Electronic energy + Delta-G solvation = -14435.267417 eV Core-core repulsion = 11973.946284 eV Total energy + Delta-G solvation = -2461.321133 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.77275 -36.38287 -36.24837 -33.70506 -31.78769 -31.25349 -29.10478 -26.37770 -24.04172 -23.32342 -21.38918 -20.56958 -18.77366 -16.99600 -16.57487 -15.84828 -15.04372 -14.83582 -14.52373 -14.09456 -14.01307 -13.91811 -13.12133 -12.79788 -12.71750 -12.35397 -11.92277 -11.90248 -11.62345 -11.25586 -10.95729 -10.75695 -10.63482 -10.27089 -9.79218 -9.54526 -9.20772 -9.04148 -8.42012 -7.49900 -6.07313 -4.10228 0.84467 1.49689 2.67720 2.98932 3.29723 3.34220 3.36093 3.42769 3.90808 3.97167 4.40807 4.74876 4.91328 5.24364 5.28890 5.33665 5.38196 5.59147 5.59419 5.77304 5.97764 6.09444 6.21937 6.43653 6.47153 6.49770 6.71971 6.88353 7.22402 7.52981 7.55099 7.64045 7.67007 7.90728 8.32450 8.95737 9.54447 11.03935 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040687 B = 0.004435 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.016984 B = 6311.649806 C = 6973.914264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.262 3.738 3 C -0.129 4.129 4 C -0.022 4.022 5 C -0.193 4.193 6 C -0.039 4.039 7 C -0.201 4.201 8 C 0.273 3.727 9 N -0.730 5.730 10 C 0.115 3.885 11 C -0.123 4.123 12 C 0.026 3.974 13 C -0.525 4.525 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 H 0.126 0.874 22 H 0.125 0.875 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.400 0.600 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 -3.006 -17.599 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.043 4.043 5 C -0.213 4.213 6 C -0.059 4.059 7 C -0.224 4.224 8 C 0.161 3.839 9 N -0.353 5.353 10 C -0.008 4.008 11 C -0.161 4.161 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.144 0.856 22 H 0.143 0.857 23 H 0.145 0.855 24 H 0.152 0.848 25 H 0.234 0.766 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.566 -2.941 -17.211 17.648 hybrid contribution -0.548 0.156 0.896 1.062 sum 2.018 -2.785 -16.315 16.674 Atomic orbital electron populations 1.81254 1.12045 1.10957 1.07121 1.25659 0.92623 0.93028 0.93917 1.15519 0.84033 1.19982 0.94348 1.20855 0.94210 0.93808 0.95430 1.20758 0.93426 1.08587 0.98531 1.21125 0.99945 0.93028 0.91763 1.20720 0.91381 1.10430 0.99827 1.17847 0.91735 0.89415 0.84917 1.45201 1.08917 1.75623 1.05573 1.21794 0.95824 1.00820 0.82354 1.21889 0.97976 1.00954 0.95289 1.19016 0.95393 0.97341 0.89409 1.21164 0.93006 1.49445 0.92675 0.92729 1.25006 0.95150 0.95245 0.98899 1.69941 1.12284 1.49626 1.21487 0.86638 0.81074 0.78757 0.81434 1.20210 1.21195 1.20215 0.85572 0.85695 0.85535 0.84778 0.76566 0.91704 0.91708 0.92673 0.92679 0.96237 0.96243 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.83 18.54 41.83 0.78 -6.05 16 2 C 0.26 3.57 14.09 -22.47 -0.32 3.25 16 3 C -0.13 -1.53 5.76 -106.62 -0.61 -2.15 16 4 C -0.02 -0.21 9.75 -39.19 -0.38 -0.59 16 5 C -0.19 -1.59 10.02 -39.62 -0.40 -1.98 16 6 C -0.04 -0.34 10.03 -39.54 -0.40 -0.74 16 7 C -0.20 -2.20 9.29 -39.42 -0.37 -2.57 16 8 C 0.27 3.42 6.66 -83.56 -0.56 2.87 16 9 N -0.73 -10.20 5.64 -58.42 -0.33 -10.53 16 10 C 0.11 1.77 4.91 -4.04 -0.02 1.75 16 11 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 12 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 22 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 23 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 24 H 0.13 1.43 6.72 -52.49 -0.35 1.08 16 25 H 0.40 5.71 7.33 -40.82 -0.30 5.41 16 26 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 27 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 286.37 15.07 4.32 4.32 Total: -1.00 -30.01 286.37 -7.24 -37.25 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.98 Total: -0.40 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.74 Total: -15.44 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.18 Total: -42.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.01 -7.24 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.063 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds