Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 120.20635 * 80.55612 * 3 2 1 5 5 C 1.37796 * 119.91802 * 180.02562 * 4 3 2 6 6 C 1.38572 * 120.34678 * 359.97438 * 5 4 3 7 7 C 1.38015 * 120.42133 * 0.02562 * 6 5 4 8 8 C 1.38888 * 120.06689 * 359.71253 * 7 6 5 9 9 N 1.39032 * 120.16830 * 180.28227 * 8 7 6 10 10 C 1.46501 * 120.00281 * 0.28304 * 9 8 7 11 11 C 1.52994 * 109.47106 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47088 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99921 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47301 * 59.99649 * 17 15 13 19 19 H 1.48503 * 109.47197 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47072 * 299.99921 * 17 15 13 21 21 H 1.08001 * 120.04427 * 359.97438 * 4 3 2 22 22 H 1.08008 * 119.82908 * 179.97438 * 5 4 3 23 23 H 1.07996 * 119.78644 * 179.97438 * 6 5 4 24 24 H 1.08000 * 119.96312 * 180.02562 * 7 6 5 25 25 H 0.97004 * 120.00087 * 180.27617 * 9 8 7 26 26 H 1.08998 * 109.46715 * 299.99546 * 10 9 8 27 27 H 1.08996 * 109.46917 * 59.99467 * 10 9 8 28 28 H 1.09004 * 109.47463 * 299.99908 * 11 10 9 29 29 H 1.09002 * 109.47684 * 59.99711 * 11 10 9 30 30 H 1.08999 * 109.47395 * 299.99720 * 12 11 10 31 31 H 1.08997 * 109.47201 * 60.00127 * 12 11 10 32 32 H 0.96995 * 119.99854 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.1972 -1.1911 5 6 4.6490 -0.1959 -1.1842 6 6 5.3430 0.0012 -0.0011 7 6 4.6628 0.1979 1.1836 8 6 3.2740 0.2054 1.1957 9 7 2.5868 0.4093 2.3870 10 6 3.3275 0.6231 3.6327 11 6 2.3409 0.8208 4.7852 12 6 3.1145 1.0434 6.0863 13 6 2.1426 1.2388 7.2214 14 1 1.0795 1.2070 7.0337 15 6 2.6107 1.4573 8.4998 16 7 3.9052 1.4946 8.7287 17 14 1.4061 1.6988 9.9069 18 1 0.5511 0.4919 10.0392 19 1 2.1570 1.9150 11.1697 20 1 0.5526 2.8821 9.6303 21 1 2.7352 -0.3517 -2.1160 22 1 5.1910 -0.3494 -2.1057 23 1 6.4229 0.0000 -0.0060 24 1 5.2112 0.3512 2.1013 25 1 1.6167 0.4101 2.3933 26 1 3.9548 -0.2449 3.8359 27 1 3.9542 1.5095 3.5352 28 1 1.7138 1.6889 4.5818 29 1 1.7138 -0.0654 4.8829 30 1 3.7412 0.1751 6.2895 31 1 3.7417 1.9295 5.9890 32 1 4.2345 1.6486 9.6279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 17.725215 kcal Electronic energy + Delta-G solvation = -14436.008432 eV Core-core repulsion = 11973.946284 eV Total energy + Delta-G solvation = -2462.062148 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64952 -37.56424 -37.33228 -35.48241 -33.42551 -32.14112 -30.29937 -27.96894 -25.18480 -24.65480 -22.52172 -22.04308 -19.72750 -18.54120 -17.89394 -17.01194 -16.50379 -16.39551 -15.60297 -15.13187 -15.05442 -14.95401 -14.26770 -14.07144 -14.04727 -13.84048 -13.67339 -13.16007 -12.74990 -12.61382 -12.47632 -12.36247 -11.94285 -11.80451 -11.48107 -11.22586 -11.01260 -10.56385 -9.84357 -8.44759 -8.22249 -6.32726 0.01338 0.70679 1.39390 1.41221 1.49352 1.62831 2.03936 2.32356 2.42462 3.02461 3.06483 3.11481 3.93035 4.10814 4.19809 4.25415 4.50312 4.54229 4.61081 4.67829 4.93529 4.98497 5.07881 5.11310 5.29127 5.47253 5.51587 5.69406 5.70863 5.81809 5.91917 6.17576 6.25558 6.50886 6.58543 6.83105 7.36390 8.89121 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040687 B = 0.004435 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.016984 B = 6311.649806 C = 6973.914264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.279 3.721 3 C -0.143 4.143 4 C -0.020 4.020 5 C -0.180 4.180 6 C -0.031 4.031 7 C -0.214 4.214 8 C 0.254 3.746 9 N -0.739 5.739 10 C 0.133 3.867 11 C -0.109 4.109 12 C 0.029 3.971 13 C -0.549 4.549 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.269 1.269 21 H 0.148 0.852 22 H 0.159 0.841 23 H 0.156 0.844 24 H 0.133 0.867 25 H 0.395 0.605 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -3.255 -19.077 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.034 4.034 3 C -0.152 4.152 4 C -0.041 4.041 5 C -0.199 4.199 6 C -0.050 4.050 7 C -0.237 4.237 8 C 0.144 3.856 9 N -0.364 5.364 10 C 0.009 3.991 11 C -0.147 4.147 12 C -0.009 4.009 13 C -0.587 4.587 14 H 0.074 0.926 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.194 1.194 21 H 0.166 0.834 22 H 0.177 0.823 23 H 0.174 0.826 24 H 0.151 0.849 25 H 0.229 0.771 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.262 -3.196 -18.728 19.277 hybrid contribution -0.646 0.214 1.246 1.420 sum 2.616 -2.982 -17.482 17.927 Atomic orbital electron populations 1.81256 1.13312 1.12795 1.08557 1.25993 0.92953 0.91806 0.92641 1.15707 0.83044 1.21275 0.95202 1.21188 0.94961 0.92727 0.95204 1.21188 0.92961 1.06175 0.99618 1.21521 1.01514 0.90992 0.90965 1.20888 0.90767 1.11062 1.00958 1.18038 0.92444 0.90683 0.84392 1.44978 1.08551 1.77218 1.05624 1.21416 0.94629 1.01150 0.81896 1.21612 0.98043 1.00705 0.94375 1.18896 0.94939 0.95547 0.91483 1.21641 0.93650 1.49346 0.94023 0.92634 1.25891 0.96930 0.94880 1.01690 1.70058 1.14094 1.50469 1.22213 0.85570 0.78827 0.78996 0.78081 1.19427 1.20589 1.19434 0.83409 0.82319 0.82597 0.84938 0.77075 0.91394 0.91402 0.92868 0.92876 0.98089 0.98094 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.18 18.54 19.00 0.35 -14.83 16 2 C 0.28 7.52 14.09 88.33 1.25 8.76 16 3 C -0.14 -3.19 5.76 -21.16 -0.12 -3.31 16 4 C -0.02 -0.31 9.75 22.52 0.22 -0.10 16 5 C -0.18 -2.20 10.02 22.24 0.22 -1.97 16 6 C -0.03 -0.43 10.03 22.30 0.22 -0.20 16 7 C -0.21 -4.31 9.29 22.37 0.21 -4.10 16 8 C 0.25 6.13 6.66 38.67 0.26 6.39 16 9 N -0.74 -20.63 5.64 -338.74 -1.91 -22.54 16 10 C 0.13 4.10 4.91 86.38 0.42 4.53 16 11 C -0.11 -4.27 5.27 30.59 0.16 -4.11 16 12 C 0.03 1.46 4.97 29.85 0.15 1.61 16 13 C -0.55 -30.83 9.11 25.60 0.23 -30.60 16 14 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.00 0.25 5.46 84.65 0.46 0.72 16 16 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 17 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 22 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 23 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 24 H 0.13 2.67 6.72 -2.91 -0.02 2.65 16 25 H 0.40 11.49 7.33 -92.71 -0.68 10.81 16 26 H 0.07 2.04 7.93 -2.39 -0.02 2.02 16 27 H 0.07 2.04 7.95 -2.39 -0.02 2.02 16 28 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -65.34 286.37 4.88 -60.46 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.44 Total: 8.31 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.68 Total: -22.39 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.27 Total: -92.37 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.34 4.88 -60.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.189 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds