Wall clock time and date at job start Mon Mar 30 2020 03:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38245 * 119.88497 * 2 1 4 4 C 1.37975 * 120.23340 * 179.97438 * 3 2 1 5 5 C 1.39674 * 119.99802 * 0.02562 * 4 3 2 6 6 C 1.43201 * 120.11529 * 180.02562 * 5 4 3 7 7 N 4.80235 * 137.06497 * 359.92965 * 3 1 2 8 8 C 1.39509 * 119.77072 * 359.74878 * 5 4 3 9 9 C 1.38669 * 119.76581 * 0.48332 * 8 5 4 10 10 N 1.39702 * 120.00078 * 179.79916 * 9 8 5 11 11 C 1.46499 * 119.99863 * 359.43977 * 10 9 8 12 12 H 1.08999 * 109.47228 * 325.27869 * 11 10 9 13 13 C 1.52999 * 109.47341 * 85.28030 * 11 10 9 14 14 C 1.50706 * 109.47303 * 205.27895 * 11 10 9 15 15 H 1.07998 * 119.99769 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00286 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99896 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99872 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46927 * 90.00469 * 18 16 14 20 20 H 1.48504 * 109.47102 * 210.00293 * 18 16 14 21 21 H 1.48497 * 109.47275 * 330.00418 * 18 16 14 22 22 H 1.08998 * 109.47337 * 270.02727 * 1 2 3 23 23 H 1.08995 * 109.46698 * 30.02733 * 1 2 3 24 24 H 1.09003 * 109.47128 * 150.02352 * 1 2 3 25 25 H 1.07995 * 119.88652 * 359.97190 * 3 2 1 26 26 H 1.08004 * 120.00112 * 180.02562 * 4 3 2 27 27 H 1.08002 * 120.11868 * 180.27216 * 8 5 4 28 28 H 0.97001 * 120.00286 * 179.72420 * 10 9 8 29 29 H 1.08996 * 109.47098 * 180.02562 * 13 11 10 30 30 H 1.09001 * 109.46823 * 300.00095 * 13 11 10 31 31 H 1.08999 * 109.47091 * 59.99755 * 13 11 10 32 32 H 0.96999 * 119.99952 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1986 0.0000 4 6 3.5756 1.2070 0.0005 5 6 4.2812 0.0016 0.0005 6 6 5.7132 0.0074 0.0016 7 7 6.8492 0.0119 0.0040 8 6 3.5862 -1.2080 0.0053 9 6 2.1995 -1.2052 -0.0001 10 7 1.4985 -2.4136 0.0004 11 6 2.2284 -3.6838 -0.0058 12 1 3.1391 -3.5766 -0.5950 13 6 2.5920 -4.0700 1.4293 14 6 1.3621 -4.7582 -0.6110 15 1 0.3674 -4.5187 -0.9568 16 6 1.8396 -6.0466 -0.7241 17 7 3.0511 -6.3382 -0.3033 18 14 0.7659 -7.3781 -1.4749 19 1 0.9942 -7.4297 -2.9413 20 1 1.1123 -8.6910 -0.8735 21 1 -0.6622 -7.0722 -1.2067 22 1 -0.3634 0.0005 1.0276 23 1 -0.3632 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6521 2.1317 -0.0005 26 1 4.1099 2.1456 0.0009 27 1 4.1261 -2.1433 0.0098 28 1 0.5285 -2.4117 0.0006 29 1 3.1355 -5.0148 1.4247 30 1 3.2186 -3.2930 1.8670 31 1 1.6813 -4.1772 2.0185 32 1 3.3869 -7.2447 -0.3826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050430287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:57 Heat of formation + Delta-G solvation = 29.966485 kcal Electronic energy + Delta-G solvation = -15175.310089 eV Core-core repulsion = 12713.778762 eV Total energy + Delta-G solvation = -2461.531327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67979 -37.94078 -37.00497 -34.69257 -33.61415 -31.45414 -29.24214 -28.20359 -27.21212 -23.93399 -22.99886 -21.66617 -20.12115 -18.40874 -17.19074 -16.55306 -16.38470 -15.98848 -15.30253 -15.04406 -14.92583 -14.42444 -14.30201 -13.90781 -13.79424 -13.72379 -13.19569 -13.00370 -12.89393 -12.76225 -12.49429 -12.28684 -12.17612 -12.14396 -11.72797 -11.10504 -10.85335 -10.49039 -9.59706 -8.20929 -8.04512 -6.33179 -0.05233 0.79189 1.43148 1.44298 1.53960 1.61523 2.03537 2.37771 2.84934 3.05824 3.09553 3.14049 4.04827 4.19814 4.33649 4.57139 4.69157 4.81304 4.90489 4.96171 4.97916 5.05388 5.13587 5.32217 5.41757 5.44294 5.56683 5.63612 5.69292 5.85957 6.05568 6.13050 6.44447 6.54989 6.84173 7.23891 7.40182 8.87349 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.007134 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.463401 B = 3923.687134 C = 4699.497078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.144 4.144 3 C -0.065 4.065 4 C -0.129 4.129 5 C -0.005 4.005 6 C 0.282 3.718 7 N -0.471 5.471 8 C -0.174 4.174 9 C 0.210 3.790 10 N -0.726 5.726 11 C 0.275 3.725 12 H 0.007 0.993 13 C -0.140 4.140 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.263 1.263 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.054 0.946 25 H 0.168 0.832 26 H 0.151 0.849 27 H 0.102 0.898 28 H 0.399 0.601 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.032 0.968 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 13.308 0.912 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.149 4.149 3 C -0.083 4.083 4 C -0.152 4.152 5 C -0.009 4.009 6 C -0.032 4.032 7 N -0.147 5.147 8 C -0.200 4.200 9 C 0.103 3.897 10 N -0.352 5.352 11 C 0.171 3.829 12 H 0.025 0.975 13 C -0.199 4.199 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.789 3.211 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.187 1.187 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.186 0.814 26 H 0.169 0.831 27 H 0.120 0.880 28 H 0.236 0.764 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.759 12.938 0.935 13.817 hybrid contribution -0.621 -1.461 -0.327 1.621 sum -5.381 11.477 0.608 12.690 Atomic orbital electron populations 1.20701 0.89369 1.03364 1.02901 1.19947 0.97448 0.91061 1.06494 1.21024 0.92892 0.97716 0.96695 1.21062 0.94627 0.95674 1.03795 1.15773 0.82887 0.95071 1.07150 1.26106 0.93055 0.91934 0.92131 1.81177 1.13191 1.09300 1.11026 1.20589 0.93328 0.96787 1.09266 1.17846 0.90684 0.87311 0.93881 1.45269 1.08324 1.02671 1.78917 1.18340 0.91618 0.80420 0.92566 0.97494 1.22002 0.99226 1.00711 0.97954 1.21550 1.01637 0.94170 1.40863 0.91654 1.25685 0.96286 1.00709 0.95611 1.70013 1.17594 1.20768 1.47093 0.85460 0.79292 0.78037 0.78266 1.20424 1.21082 1.18724 0.90458 0.88857 0.92756 0.81422 0.83124 0.87973 0.76437 0.91877 0.95895 0.94843 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.56 71.24 0.68 -1.38 16 2 C -0.14 -3.61 5.90 -19.68 -0.12 -3.72 16 3 C -0.06 -1.29 9.67 22.21 0.21 -1.07 16 4 C -0.13 -2.88 9.75 22.55 0.22 -2.66 16 5 C 0.00 -0.14 5.73 -21.38 -0.12 -0.27 16 6 C 0.28 9.32 15.33 88.33 1.35 10.68 16 7 N -0.47 -17.17 18.54 19.00 0.35 -16.82 16 8 C -0.17 -6.24 8.55 22.68 0.19 -6.04 16 9 C 0.21 7.11 6.61 38.17 0.25 7.36 16 10 N -0.73 -27.89 5.14 -322.61 -1.66 -29.54 16 11 C 0.27 13.13 2.25 44.25 0.10 13.23 16 12 H 0.01 0.39 6.49 -2.39 -0.02 0.38 16 13 C -0.14 -6.62 9.20 71.98 0.66 -5.96 16 14 C -0.54 -27.95 8.73 25.60 0.22 -27.73 16 15 H 0.07 3.22 7.74 -2.91 -0.02 3.19 16 16 C 0.02 0.90 5.30 84.65 0.45 1.35 16 17 N -0.92 -51.04 11.32 21.45 0.24 -50.79 16 18 Si 0.96 41.53 29.54 68.60 2.03 43.55 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 24 H 0.05 1.17 6.53 -2.39 -0.02 1.16 16 25 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.10 4.29 6.09 -2.91 -0.02 4.28 16 28 H 0.40 13.92 6.51 -92.71 -0.60 13.32 16 29 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 30 H 0.02 0.99 7.68 -2.39 -0.02 0.97 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -59.82 278.33 5.61 -54.21 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.54 Total: 15.60 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.11 Total: -16.21 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -1.06 Total: -97.15 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -59.82 5.61 -54.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050430287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.175 kcal (2) G-P(sol) polarization free energy of solvation -59.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds