Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38563 * 119.78992 * 2 1 4 4 C 1.37802 * 120.34656 * 179.73801 * 3 2 1 5 5 C 1.39731 * 119.91559 * 0.58567 * 4 3 2 6 6 C 1.43205 * 120.20443 * 179.69631 * 5 4 3 7 7 N 4.80148 * 137.07664 * 0.05594 * 3 1 2 8 8 C 1.40362 * 119.58874 * 359.42177 * 5 4 3 9 9 N 1.39023 * 120.17395 * 180.30106 * 8 5 4 10 10 C 1.46898 * 111.00395 * 116.04550 * 9 8 5 11 11 C 1.46902 * 110.99763 * 239.99932 * 9 8 5 12 12 C 1.50703 * 109.47293 * 169.99698 * 11 9 8 13 13 H 1.08006 * 119.99872 * 359.97438 * 12 11 9 14 14 C 1.37877 * 120.00304 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99833 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00019 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47214 * 60.00333 * 16 14 12 18 18 H 1.48499 * 109.47199 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47462 * 300.00136 * 16 14 12 20 20 C 1.38020 * 119.78723 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47191 * 269.97713 * 1 2 3 22 22 H 1.08999 * 109.46828 * 29.97620 * 1 2 3 23 23 H 1.09003 * 109.46834 * 149.97314 * 1 2 3 24 24 H 1.08001 * 119.83226 * 0.02583 * 3 2 1 25 25 H 1.08001 * 120.03913 * 180.30705 * 4 3 2 26 26 H 1.08997 * 109.47076 * 59.99966 * 10 9 8 27 27 H 1.09005 * 109.47097 * 180.02562 * 10 9 8 28 28 H 1.08997 * 109.46828 * 299.99848 * 10 9 8 29 29 H 1.08998 * 109.47224 * 289.99770 * 11 9 8 30 30 H 1.09001 * 109.47016 * 49.99750 * 11 9 8 31 31 H 0.96996 * 119.99883 * 179.97438 * 15 14 12 32 32 H 1.07996 * 119.96498 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2025 0.0000 4 6 3.5733 1.2159 0.0054 5 6 4.2820 0.0117 -0.0014 6 6 5.7140 0.0184 -0.0024 7 7 6.8499 0.0237 -0.0032 8 6 3.5815 -1.2047 -0.0015 9 7 4.2743 -2.4100 -0.0019 10 6 4.0150 -3.1668 1.2301 11 6 3.9418 -3.2079 -1.1897 12 6 4.8818 -4.3819 -1.2856 13 1 5.6497 -4.5212 -0.5390 14 6 4.7614 -5.2782 -2.3263 15 7 3.8266 -5.1084 -3.2356 16 14 5.9270 -6.7330 -2.4455 17 1 5.7936 -7.5751 -1.2296 18 1 5.5900 -7.5403 -3.6454 19 1 7.3237 -6.2406 -2.5558 20 6 2.1926 -1.1978 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 1.6492 2.1343 0.0004 25 1 4.1048 2.1561 0.0104 26 1 2.9484 -3.3768 1.3098 27 1 4.5694 -4.1050 1.2038 28 1 4.3351 -2.5801 2.0911 29 1 2.9165 -3.5690 -1.1095 30 1 4.0405 -2.5896 -2.0820 31 1 3.7422 -5.7387 -3.9680 32 1 1.6486 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051578490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = 55.235882 kcal Electronic energy + Delta-G solvation = -15276.591436 eV Core-core repulsion = 12816.155872 eV Total energy + Delta-G solvation = -2460.435563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77076 -36.37164 -35.94310 -32.79702 -32.38621 -29.69996 -27.41257 -27.29249 -25.20130 -22.82581 -22.05287 -20.16726 -18.47541 -16.45411 -15.77810 -15.36309 -14.79921 -14.34169 -14.05630 -13.82912 -13.42095 -13.10956 -13.03582 -12.60403 -12.53331 -12.09346 -11.89506 -11.69806 -11.44446 -11.34387 -11.04555 -10.98907 -10.68760 -10.59991 -10.05442 -9.38177 -8.61731 -8.50854 -8.30250 -7.60670 -6.09161 -4.11207 1.05335 1.51529 3.26800 3.31274 3.32079 3.35366 3.39269 4.18314 4.35440 4.40150 4.63176 4.90606 5.02524 5.26757 5.33729 5.43333 5.60204 5.67683 5.76944 5.90103 6.07417 6.09337 6.12941 6.35008 6.53702 6.62679 6.69293 6.91440 7.15438 7.21700 7.73447 7.90101 8.03212 8.08656 8.46032 8.94591 9.53111 11.01493 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026606 B = 0.007596 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.136452 B = 3685.389551 C = 4302.549835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C -0.140 4.140 4 C -0.066 4.066 5 C -0.030 4.030 6 C 0.278 3.722 7 N -0.432 5.432 8 C 0.171 3.829 9 N -0.522 5.522 10 C 0.044 3.956 11 C 0.201 3.799 12 C -0.513 4.513 13 H 0.064 0.936 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.001 0.999 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.919 10.406 7.155 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.054 4.054 3 C -0.158 4.158 4 C -0.087 4.087 5 C -0.035 4.035 6 C -0.037 4.037 7 N -0.107 5.107 8 C 0.073 3.927 9 N -0.243 5.243 10 C -0.103 4.103 11 C 0.078 3.922 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.173 4.173 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.707 10.388 6.958 13.744 hybrid contribution -0.687 -1.124 -0.274 1.345 sum -6.394 9.264 6.684 13.091 Atomic orbital electron populations 1.20856 0.91148 1.03066 1.02340 1.19992 0.96129 0.92872 0.96375 1.20802 0.93454 0.97540 1.04024 1.21000 0.94109 0.96122 0.97464 1.16095 0.84814 0.93501 1.09069 1.25291 0.92344 0.92619 0.93434 1.81105 1.12170 1.08387 1.09037 1.19097 0.90041 0.91557 0.92019 1.59700 1.55887 1.03206 1.05556 1.22260 0.99042 0.98880 0.90115 1.19831 0.95450 0.91661 0.85217 1.21075 1.15937 1.07820 1.10305 0.91747 1.24963 0.95721 0.98235 0.95450 1.69940 1.32911 1.37236 1.13448 0.86525 0.81300 0.82012 0.77413 1.20177 1.21246 1.20107 1.21693 0.94432 0.98400 1.02807 0.91010 0.91400 0.91206 0.85518 0.85246 0.95946 0.89813 0.93275 0.98103 0.94975 0.92729 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.00 36.00 0.36 -0.76 16 2 C -0.05 -0.66 5.88 -104.58 -0.62 -1.27 16 3 C -0.14 -1.59 9.67 -39.62 -0.38 -1.98 16 4 C -0.07 -0.84 9.75 -39.18 -0.38 -1.23 16 5 C -0.03 -0.51 5.76 -106.61 -0.61 -1.12 16 6 C 0.28 5.29 14.81 -22.47 -0.33 4.95 16 7 N -0.43 -8.96 18.54 41.83 0.78 -8.18 16 8 C 0.17 3.13 4.67 -83.56 -0.39 2.74 16 9 N -0.52 -11.25 4.09 -180.08 -0.74 -11.99 16 10 C 0.04 0.82 9.19 60.06 0.55 1.38 16 11 C 0.20 5.14 4.30 -4.97 -0.02 5.12 16 12 C -0.51 -14.33 8.46 -34.44 -0.29 -14.62 16 13 H 0.06 1.80 7.12 -52.48 -0.37 1.42 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.15 -2.42 8.28 -39.42 -0.33 -2.75 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 23 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 24 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 25 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.02 0.39 7.33 -51.93 -0.38 0.01 16 27 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.00 0.03 7.47 -51.93 -0.39 -0.36 16 30 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.13 2.09 7.12 -52.49 -0.37 1.72 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -31.00 283.73 -6.46 -37.46 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -3.95 Total: -4.75 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.54 Total: -7.99 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.78 Total: -45.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.00 -6.46 -37.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051578490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.701 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds