Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37898 * 120.15382 * 2 1 4 4 C 1.38734 * 120.44905 * 180.02562 * 3 2 1 5 5 C 1.36641 * 120.67093 * 359.76985 * 4 3 2 6 6 C 1.39695 * 119.88288 * 0.45322 * 5 4 3 7 7 N 1.35787 * 133.60192 * 179.87260 * 6 5 4 8 8 C 1.30113 * 109.64341 * 179.71081 * 7 6 5 9 9 N 1.36034 * 110.11102 * 359.97438 * 8 7 6 10 10 C 1.46493 * 126.35228 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47475 * 265.03213 * 10 9 8 12 12 C 1.50707 * 109.47196 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99724 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00048 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00265 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00159 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46823 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47273 * 119.99553 * 16 14 12 19 19 H 1.48493 * 109.47299 * 239.99836 * 16 14 12 20 20 C 1.38060 * 107.30258 * 0.02562 * 9 8 7 21 21 H 1.09001 * 109.47281 * 269.98064 * 1 2 3 22 22 H 1.08997 * 109.47023 * 29.97447 * 1 2 3 23 23 H 1.08995 * 109.46914 * 149.97827 * 1 2 3 24 24 H 1.08003 * 119.77798 * 0.04331 * 3 2 1 25 25 H 1.08005 * 119.66299 * 180.02562 * 4 3 2 26 26 H 1.08003 * 120.05372 * 180.02562 * 5 4 3 27 27 H 1.08001 * 124.94169 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46912 * 25.03670 * 10 9 8 29 29 H 1.08999 * 109.47157 * 145.02356 * 10 9 8 30 30 H 1.09000 * 109.47159 * 299.99441 * 11 10 9 31 31 H 1.08999 * 109.47112 * 59.99998 * 11 10 9 32 32 H 0.97003 * 120.00583 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1924 0.0000 4 6 3.5870 1.1995 -0.0005 5 6 4.2901 0.0279 0.0037 6 6 3.6096 -1.1921 -0.0011 7 7 4.0122 -2.4890 -0.0010 8 6 2.9716 -3.2700 -0.0006 9 7 1.8307 -2.5292 0.0003 10 6 0.4599 -3.0458 0.0005 11 6 -0.0620 -3.1079 -1.4363 12 6 -1.4720 -3.6400 -1.4361 13 1 -1.9481 -3.9075 -0.5043 14 6 -2.1538 -3.7863 -2.6255 15 7 -1.5740 -3.4611 -3.7601 16 14 -3.9013 -4.4465 -2.6253 17 1 -4.3208 -4.7362 -1.2305 18 1 -4.8128 -3.4344 -3.2168 19 1 -3.9591 -5.6942 -3.4283 20 6 2.2042 -1.2001 -0.0002 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6585 2.1271 0.0007 25 1 4.1167 2.1408 -0.0001 26 1 5.3699 0.0451 0.0036 27 1 3.0084 -4.3494 -0.0008 28 1 0.4485 -4.0455 0.4348 29 1 -0.1768 -2.3863 0.5902 30 1 -0.0507 -2.1082 -1.8706 31 1 0.5747 -3.7675 -2.0260 32 1 -2.0538 -3.5636 -4.5969 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059075416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = 56.927936 kcal Electronic energy + Delta-G solvation = -15496.409319 eV Core-core repulsion = 13036.047129 eV Total energy + Delta-G solvation = -2460.362190 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72339 -37.17163 -35.11486 -32.99460 -31.51530 -29.60381 -28.95502 -26.50523 -24.85178 -22.42735 -22.11937 -21.32444 -19.31865 -16.95594 -16.74778 -15.94991 -15.31176 -15.05966 -14.49981 -14.11239 -13.55227 -13.19678 -13.01875 -12.92634 -12.50262 -11.99713 -11.75923 -11.32640 -11.17002 -11.04001 -10.92938 -10.76851 -10.32596 -10.23891 -9.55406 -9.46279 -9.37420 -8.56879 -7.95148 -7.53785 -6.20410 -4.27048 1.32227 1.91799 3.16174 3.19444 3.25998 3.28802 3.31502 4.21971 4.29745 4.65750 4.97906 5.15795 5.23401 5.31470 5.36734 5.62055 5.73339 5.89124 5.92613 6.01585 6.06755 6.08886 6.35655 6.47765 6.55767 6.80093 6.91101 6.93149 7.24507 7.37377 7.42174 7.60005 7.78909 8.09018 8.29051 8.79017 9.39292 10.90342 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037008 B = 0.006781 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.403841 B = 4128.400242 C = 4525.158494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.129 4.129 5 C -0.080 4.080 6 C 0.043 3.957 7 N -0.514 5.514 8 C 0.259 3.741 9 N -0.474 5.474 10 C 0.103 3.897 11 C 0.010 3.990 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.051 3.949 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.209 0.791 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 5.615 7.681 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.150 4.150 5 C -0.099 4.099 6 C -0.076 4.076 7 N -0.233 5.233 8 C -0.026 4.026 9 N -0.161 5.161 10 C -0.018 4.018 11 C -0.027 4.027 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.060 4.060 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.111 0.889 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.225 0.775 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.101 5.286 7.497 11.017 hybrid contribution -1.812 -0.267 -0.247 1.848 sum 4.290 5.019 7.250 9.806 Atomic orbital electron populations 1.21117 0.90889 1.04826 1.02132 1.18907 0.95861 0.89888 1.01634 1.20689 0.94009 0.96347 1.03086 1.20498 0.93986 0.97324 1.03156 1.19861 0.99289 0.89257 1.01524 1.19085 0.90222 0.92382 1.05922 1.70423 1.29057 1.00233 1.23636 1.25252 0.79978 0.99060 0.98341 1.45890 1.08948 1.04359 1.56862 1.22484 0.76942 0.99157 1.03189 1.19522 0.96418 0.98503 0.88290 1.21012 0.98119 1.44553 0.93242 0.92159 1.24998 0.98434 0.95126 0.95461 1.69975 1.37428 1.47241 0.97850 0.86465 0.84167 0.78714 0.78258 1.19582 1.20820 1.20834 1.18783 0.95005 0.85420 1.06751 0.91699 0.91493 0.88947 0.85867 0.86003 0.86083 0.77493 0.89782 0.89914 0.95402 0.95815 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.98 36.00 0.32 -1.84 16 2 C -0.06 -1.04 5.89 -104.54 -0.62 -1.66 16 3 C -0.12 -1.80 9.69 -39.52 -0.38 -2.18 16 4 C -0.13 -1.81 9.96 -39.98 -0.40 -2.21 16 5 C -0.08 -1.27 10.05 -39.61 -0.40 -1.67 16 6 C 0.04 0.82 7.23 -84.70 -0.61 0.21 16 7 N -0.51 -9.76 11.27 -12.05 -0.14 -9.90 16 8 C 0.26 4.50 12.49 -89.78 -1.12 3.38 16 9 N -0.47 -8.86 2.81 -115.80 -0.32 -9.18 16 10 C 0.10 1.94 5.25 -4.05 -0.02 1.92 16 11 C 0.01 0.25 4.78 -27.88 -0.13 0.11 16 12 C -0.53 -13.74 9.11 -34.44 -0.31 -14.05 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.69 5.46 -17.83 -0.10 1.59 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.05 0.98 6.77 -83.99 -0.57 0.41 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 23 H 0.09 1.76 3.90 -51.93 -0.20 1.56 16 24 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 25 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 26 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.21 2.73 8.06 -52.49 -0.42 2.31 16 28 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 29 H 0.08 1.50 6.30 -51.93 -0.33 1.17 16 30 H 0.03 0.73 6.73 -51.93 -0.35 0.38 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -30.38 271.58 -8.79 -39.17 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -3.80 Total: 1.15 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -4.34 Total: -15.99 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.28 Total: -43.83 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.38 -8.79 -39.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059075416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.103 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds