Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37898 * 120.15382 * 2 1 4 4 C 1.38734 * 120.44905 * 180.02562 * 3 2 1 5 5 C 1.36641 * 120.67093 * 359.76985 * 4 3 2 6 6 C 1.39695 * 119.88288 * 0.45322 * 5 4 3 7 7 N 1.35787 * 133.60192 * 179.87260 * 6 5 4 8 8 C 1.30113 * 109.64341 * 179.71081 * 7 6 5 9 9 N 1.36034 * 110.11102 * 359.97438 * 8 7 6 10 10 C 1.46493 * 126.35228 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47475 * 265.03213 * 10 9 8 12 12 C 1.50707 * 109.47196 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99724 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00048 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00265 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00159 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46823 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47273 * 119.99553 * 16 14 12 19 19 H 1.48493 * 109.47299 * 239.99836 * 16 14 12 20 20 C 1.38060 * 107.30258 * 0.02562 * 9 8 7 21 21 H 1.09001 * 109.47281 * 269.98064 * 1 2 3 22 22 H 1.08997 * 109.47023 * 29.97447 * 1 2 3 23 23 H 1.08995 * 109.46914 * 149.97827 * 1 2 3 24 24 H 1.08003 * 119.77798 * 0.04331 * 3 2 1 25 25 H 1.08005 * 119.66299 * 180.02562 * 4 3 2 26 26 H 1.08003 * 120.05372 * 180.02562 * 5 4 3 27 27 H 1.08001 * 124.94169 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.46912 * 25.03670 * 10 9 8 29 29 H 1.08999 * 109.47157 * 145.02356 * 10 9 8 30 30 H 1.09000 * 109.47159 * 299.99441 * 11 10 9 31 31 H 1.08999 * 109.47112 * 59.99998 * 11 10 9 32 32 H 0.97003 * 120.00583 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1924 0.0000 4 6 3.5870 1.1995 -0.0005 5 6 4.2901 0.0279 0.0037 6 6 3.6096 -1.1921 -0.0011 7 7 4.0122 -2.4890 -0.0010 8 6 2.9716 -3.2700 -0.0006 9 7 1.8307 -2.5292 0.0003 10 6 0.4599 -3.0458 0.0005 11 6 -0.0620 -3.1079 -1.4363 12 6 -1.4720 -3.6400 -1.4361 13 1 -1.9481 -3.9075 -0.5043 14 6 -2.1538 -3.7863 -2.6255 15 7 -1.5740 -3.4611 -3.7601 16 14 -3.9013 -4.4465 -2.6253 17 1 -4.3208 -4.7362 -1.2305 18 1 -4.8128 -3.4344 -3.2168 19 1 -3.9591 -5.6942 -3.4283 20 6 2.2042 -1.2001 -0.0002 21 1 -0.3634 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6585 2.1271 0.0007 25 1 4.1167 2.1408 -0.0001 26 1 5.3699 0.0451 0.0036 27 1 3.0084 -4.3494 -0.0008 28 1 0.4485 -4.0455 0.4348 29 1 -0.1768 -2.3863 0.5902 30 1 -0.0507 -2.1082 -1.8706 31 1 0.5747 -3.7675 -2.0260 32 1 -2.0538 -3.5636 -4.5969 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059075416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = 41.035346 kcal Electronic energy + Delta-G solvation = -15497.098474 eV Core-core repulsion = 13036.047129 eV Total energy + Delta-G solvation = -2461.051345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.05280 -38.41103 -36.70345 -34.81417 -32.90962 -31.27798 -30.23297 -27.93344 -26.54064 -23.79149 -23.62710 -22.81944 -20.68605 -18.76116 -18.06917 -17.49894 -16.73935 -16.48821 -16.14479 -15.58100 -15.00413 -14.57122 -14.38955 -14.25728 -14.11840 -13.60704 -13.10233 -12.96394 -12.81035 -12.49279 -12.30674 -12.22597 -12.04731 -11.91059 -11.39669 -10.97306 -10.89150 -10.63289 -9.25284 -8.84224 -8.25639 -6.39201 0.06386 0.65797 1.40818 1.41965 1.54299 1.81126 1.92823 2.39402 2.95125 3.09498 3.41093 3.72950 3.92481 4.03881 4.13566 4.40805 4.43037 4.51005 4.62542 4.65918 4.75645 4.85694 4.89469 5.09682 5.23906 5.41164 5.45777 5.58063 5.65715 5.71599 5.73457 6.02176 6.06121 6.32007 6.77222 6.93419 7.32080 8.86233 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037008 B = 0.006781 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.403841 B = 4128.400242 C = 4525.158494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.117 4.117 5 C -0.093 4.093 6 C 0.013 3.987 7 N -0.535 5.535 8 C 0.254 3.746 9 N -0.484 5.484 10 C 0.120 3.880 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.074 0.926 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.255 1.255 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.022 3.978 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.156 0.844 25 H 0.164 0.836 26 H 0.138 0.862 27 H 0.241 0.759 28 H 0.106 0.894 29 H 0.091 0.909 30 H -0.004 1.004 31 H -0.009 1.009 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 6.514 8.930 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.112 4.112 6 C -0.105 4.105 7 N -0.255 5.255 8 C -0.031 4.031 9 N -0.171 5.171 10 C -0.001 4.001 11 C -0.015 4.015 12 C -0.577 4.577 13 H 0.092 0.908 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.179 1.179 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.088 4.088 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.174 0.826 25 H 0.181 0.819 26 H 0.156 0.844 27 H 0.257 0.743 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.014 0.986 31 H 0.009 0.991 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.701 6.197 8.769 12.157 hybrid contribution -1.597 -0.448 -0.640 1.778 sum 4.104 5.749 8.129 10.769 Atomic orbital electron populations 1.21029 0.90612 1.03824 1.02825 1.19243 0.96422 0.90345 1.02959 1.21156 0.94669 0.96668 1.00826 1.20976 0.93842 0.98291 1.00630 1.20255 1.00442 0.88973 1.01544 1.19594 0.90687 0.93217 1.07018 1.70399 1.29779 1.00788 1.24557 1.25951 0.79371 1.00388 0.97407 1.45860 1.08821 1.04701 1.57759 1.22160 0.77469 1.00659 0.99774 1.19285 0.95596 0.95629 0.90977 1.21466 0.98944 1.43544 0.93708 0.90785 1.25948 1.02860 0.95471 0.95114 1.70122 1.39383 1.49045 0.98603 0.85360 0.78782 0.77766 0.78914 1.17892 1.20723 1.20738 1.19213 0.95624 0.86051 1.07896 0.90115 0.90065 0.92244 0.82638 0.81887 0.84375 0.74296 0.87566 0.89119 0.98580 0.99057 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.98 71.24 0.64 -3.40 16 2 C -0.09 -2.94 5.89 -19.81 -0.12 -3.06 16 3 C -0.11 -3.07 9.69 22.31 0.22 -2.85 16 4 C -0.12 -2.94 9.96 22.01 0.22 -2.72 16 5 C -0.09 -2.82 10.05 22.25 0.22 -2.60 16 6 C 0.01 0.50 7.23 39.45 0.29 0.79 16 7 N -0.53 -20.42 11.27 -192.03 -2.17 -22.59 16 8 C 0.25 8.83 12.49 180.06 2.25 11.08 16 9 N -0.48 -18.24 2.81 -520.28 -1.46 -19.70 16 10 C 0.12 4.54 5.25 86.38 0.45 5.00 16 11 C 0.02 1.13 4.78 29.85 0.14 1.27 16 12 C -0.54 -27.99 9.11 25.60 0.23 -27.76 16 13 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -54.93 13.29 21.44 0.28 -54.65 16 16 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 20 C 0.02 0.84 6.77 38.86 0.26 1.11 16 21 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 23 H 0.06 2.30 3.90 -2.39 -0.01 2.30 16 24 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 25 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 26 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 27 H 0.24 6.16 8.06 -2.91 -0.02 6.14 16 28 H 0.11 3.50 8.13 -2.38 -0.02 3.48 16 29 H 0.09 3.27 6.30 -2.39 -0.02 3.26 16 30 H 0.00 -0.23 6.73 -2.39 -0.02 -0.24 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -67.15 271.58 5.07 -62.08 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.12 Total: 13.46 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.27 Total: -22.42 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.34 Total: -96.93 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -67.15 5.07 -62.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059075416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.116 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds