Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.36960 * 125.07135 * 264.69525 * 11 10 9 13 13 C 1.34213 * 109.87819 * 179.85238 * 12 11 10 14 14 C 1.46472 * 106.99413 * 0.39964 * 13 12 11 15 15 C 1.37695 * 125.06493 * 84.99942 * 11 10 9 16 16 C 1.39213 * 133.37575 * 0.02562 * 15 11 10 17 17 C 1.37767 * 120.06741 * 180.02562 * 16 15 11 18 18 C 1.38712 * 120.74148 * 359.96420 * 17 16 15 19 19 C 1.38366 * 120.28967 * 0.02562 * 18 17 16 20 20 N 1.39568 * 120.24267 * 179.97438 * 19 18 17 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.07998 * 125.05496 * 0.02562 * 12 11 10 27 27 H 1.08004 * 126.50329 * 180.15679 * 13 12 11 28 28 H 1.08010 * 119.96189 * 359.97183 * 16 15 11 29 29 H 1.07998 * 119.63009 * 179.97438 * 17 16 15 30 30 H 1.07995 * 119.85278 * 180.02562 * 18 17 16 31 31 H 0.97000 * 120.00007 * 180.02562 * 20 19 18 32 32 H 0.96997 * 119.99724 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2092 -5.6639 1.1176 13 6 0.5304 -6.7678 0.7682 14 6 0.3962 -6.7441 -0.6901 15 6 1.0315 -5.5671 -1.1212 16 6 1.0680 -5.2667 -2.4801 17 6 0.4831 -6.1186 -3.3912 18 6 -0.1464 -7.2814 -2.9721 19 6 -0.1959 -7.6023 -1.6271 20 7 -0.8300 -8.7723 -1.2064 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 1.4741 -5.3924 2.1288 27 1 0.1577 -7.5309 1.4354 28 1 1.5546 -4.3644 -2.8202 29 1 0.5152 -5.8784 -4.4437 30 1 -0.5999 -7.9391 -3.6988 31 1 -0.8629 -8.9936 -0.2626 32 1 -1.2377 -9.3640 -1.8579 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070569147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = 46.818008 kcal Electronic energy + Delta-G solvation = -15161.977381 eV Core-core repulsion = 12701.176792 eV Total energy + Delta-G solvation = -2460.800590 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73301 -37.11717 -33.97130 -33.81245 -31.90668 -28.99841 -28.55906 -27.28091 -24.75022 -22.05548 -21.63361 -20.90754 -19.34508 -17.12374 -16.60307 -16.12694 -15.54208 -14.81388 -14.67385 -14.41861 -14.02822 -13.14853 -13.01390 -12.55650 -12.34222 -12.11022 -11.95664 -11.31015 -11.11740 -10.98433 -10.70583 -10.67547 -10.16624 -10.06596 -9.79023 -9.33528 -8.46027 -8.26860 -7.67829 -6.57445 -6.09648 -4.15493 1.80604 2.17703 3.25665 3.27925 3.32859 3.34518 3.53740 4.14142 4.38467 4.45059 5.21208 5.25937 5.35845 5.46928 5.60180 5.79530 5.95987 6.09726 6.19598 6.23991 6.32194 6.40064 6.57370 6.74929 7.07536 7.10987 7.29229 7.50074 7.50919 7.71083 7.80729 7.92552 7.99706 8.00662 8.24399 8.90534 9.49523 11.01190 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041648 B = 0.005844 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.145969 B = 4790.049196 C = 5104.093152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.012 3.988 10 C 0.109 3.891 11 N -0.469 5.469 12 C 0.049 3.951 13 C -0.214 4.214 14 C -0.174 4.174 15 C 0.145 3.855 16 C -0.177 4.177 17 C -0.059 4.059 18 C -0.248 4.248 19 C 0.256 3.744 20 N -0.878 5.878 21 H 0.263 0.737 22 H 0.024 0.976 23 H 0.021 0.979 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.161 0.839 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.395 0.605 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -14.362 -1.703 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.025 4.025 10 C -0.011 4.011 11 N -0.148 5.148 12 C -0.078 4.078 13 C -0.239 4.239 14 C -0.182 4.182 15 C 0.035 3.965 16 C -0.200 4.200 17 C -0.079 4.079 18 C -0.273 4.273 19 C 0.151 3.849 20 N -0.416 5.416 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.040 0.960 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.178 0.822 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.222 0.778 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.674 -13.874 -1.659 13.989 hybrid contribution 0.176 0.749 0.205 0.796 sum 0.849 -13.125 -1.454 13.232 Atomic orbital electron populations 1.69972 1.06141 1.27031 1.49608 1.25004 0.94848 0.99374 0.94873 0.86585 0.79531 0.82772 0.78703 1.20090 1.21167 1.20133 1.20993 0.92974 0.90490 1.52318 0.92411 1.19434 0.94133 0.90582 0.98397 1.22249 0.95538 0.81013 1.02343 1.44551 1.46406 1.19668 1.04189 1.21720 1.01636 0.92881 0.91586 1.21269 1.09339 1.00811 0.92499 1.18631 1.08817 0.97555 0.93190 1.18020 0.97587 0.92255 0.88597 1.19872 1.08323 1.02246 0.89525 1.20378 0.96120 0.93172 0.98249 1.20094 1.12614 1.01673 0.92904 1.17095 0.90462 0.85529 0.91782 1.42317 1.64835 1.24137 1.10334 0.92695 0.95743 0.96023 0.90489 0.90760 0.82188 0.84813 0.86530 0.86445 0.87041 0.77764 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.01 0.31 5.30 -27.89 -0.15 0.17 16 10 C 0.11 2.24 5.94 -4.04 -0.02 2.21 16 11 N -0.47 -9.18 2.78 -114.41 -0.32 -9.50 16 12 C 0.05 0.84 11.28 -16.68 -0.19 0.65 16 13 C -0.21 -3.46 10.86 -37.69 -0.41 -3.87 16 14 C -0.17 -3.11 6.27 -104.99 -0.66 -3.77 16 15 C 0.15 2.85 6.81 -84.01 -0.57 2.28 16 16 C -0.18 -3.28 9.98 -39.39 -0.39 -3.68 16 17 C -0.06 -0.94 10.00 -39.58 -0.40 -1.34 16 18 C -0.25 -3.73 9.88 -39.36 -0.39 -4.12 16 19 C 0.26 3.98 6.78 -83.56 -0.57 3.41 16 20 N -0.88 -10.00 9.09 32.53 0.30 -9.70 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.46 8.12 -51.93 -0.42 1.03 16 25 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 27 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.39 3.96 8.66 -40.82 -0.35 3.61 16 32 H 0.39 3.47 8.84 -40.82 -0.36 3.11 16 LS Contribution 280.07 15.07 4.22 4.22 Total: -1.00 -31.49 280.07 -8.30 -39.79 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.06 Total: 6.13 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -4.16 Total: -21.27 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.71 Total: -45.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.49 -8.30 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070569147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.607 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds