Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.36960 * 125.07135 * 264.69525 * 11 10 9 13 13 C 1.34213 * 109.87819 * 179.85238 * 12 11 10 14 14 C 1.46472 * 106.99413 * 0.39964 * 13 12 11 15 15 C 1.37695 * 125.06493 * 84.99942 * 11 10 9 16 16 C 1.39213 * 133.37575 * 0.02562 * 15 11 10 17 17 C 1.37767 * 120.06741 * 180.02562 * 16 15 11 18 18 C 1.38712 * 120.74148 * 359.96420 * 17 16 15 19 19 C 1.38366 * 120.28967 * 0.02562 * 18 17 16 20 20 N 1.39568 * 120.24267 * 179.97438 * 19 18 17 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.07998 * 125.05496 * 0.02562 * 12 11 10 27 27 H 1.08004 * 126.50329 * 180.15679 * 13 12 11 28 28 H 1.08010 * 119.96189 * 359.97183 * 16 15 11 29 29 H 1.07998 * 119.63009 * 179.97438 * 17 16 15 30 30 H 1.07995 * 119.85278 * 180.02562 * 18 17 16 31 31 H 0.97000 * 120.00007 * 180.02562 * 20 19 18 32 32 H 0.96997 * 119.99724 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2092 -5.6639 1.1176 13 6 0.5304 -6.7678 0.7682 14 6 0.3962 -6.7441 -0.6901 15 6 1.0315 -5.5671 -1.1212 16 6 1.0680 -5.2667 -2.4801 17 6 0.4831 -6.1186 -3.3912 18 6 -0.1464 -7.2814 -2.9721 19 6 -0.1959 -7.6023 -1.6271 20 7 -0.8300 -8.7723 -1.2064 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 1.4741 -5.3924 2.1288 27 1 0.1577 -7.5309 1.4354 28 1 1.5546 -4.3644 -2.8202 29 1 0.5152 -5.8784 -4.4437 30 1 -0.5999 -7.9391 -3.6988 31 1 -0.8629 -8.9936 -0.2626 32 1 -1.2377 -9.3640 -1.8579 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070569147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = 27.749415 kcal Electronic energy + Delta-G solvation = -15162.804258 eV Core-core repulsion = 12701.176792 eV Total energy + Delta-G solvation = -2461.627466 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06071 -38.38505 -35.80426 -35.07948 -33.70760 -30.57450 -29.96274 -28.55219 -26.61953 -23.65985 -23.04481 -22.34985 -20.70308 -18.80015 -18.05486 -17.60140 -16.75860 -16.63881 -16.06005 -15.77842 -15.52577 -14.76742 -14.49918 -14.18328 -13.83216 -13.60284 -13.38264 -12.99323 -12.82964 -12.46845 -12.39956 -12.02651 -11.96303 -11.70240 -11.43350 -11.33280 -10.62558 -9.55405 -9.02439 -8.26083 -7.80029 -6.40106 0.52043 0.87834 1.39863 1.43353 1.51360 1.94042 2.13035 2.40484 3.08167 3.12670 3.15590 3.95174 4.03677 4.07818 4.36922 4.43586 4.48425 4.66563 4.72404 4.86573 4.94955 5.12957 5.14178 5.35394 5.41387 5.52157 5.70067 5.80249 5.90510 6.03636 6.06275 6.40909 6.57394 6.73691 6.77104 7.14316 7.30709 8.86348 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041648 B = 0.005844 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.145969 B = 4790.049196 C = 5104.093152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.025 3.975 10 C 0.126 3.874 11 N -0.485 5.485 12 C 0.025 3.975 13 C -0.203 4.203 14 C -0.198 4.198 15 C 0.113 3.887 16 C -0.218 4.218 17 C -0.051 4.051 18 C -0.253 4.253 19 C 0.259 3.741 20 N -0.859 5.859 21 H 0.265 0.735 22 H -0.015 1.015 23 H -0.008 1.008 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.184 0.816 27 H 0.169 0.831 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.404 0.596 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -15.698 -1.679 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.013 4.013 10 C 0.005 3.995 11 N -0.167 5.167 12 C -0.100 4.100 13 C -0.227 4.227 14 C -0.206 4.206 15 C 0.004 3.996 16 C -0.241 4.241 17 C -0.071 4.071 18 C -0.278 4.278 19 C 0.152 3.848 20 N -0.398 5.398 21 H 0.074 0.926 22 H 0.003 0.997 23 H 0.010 0.990 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.201 0.799 27 H 0.186 0.814 28 H 0.118 0.882 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.233 0.767 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.036 -15.279 -1.621 15.399 hybrid contribution -0.040 1.020 0.146 1.031 sum 0.997 -14.258 -1.475 14.369 Atomic orbital electron populations 1.70129 1.08146 1.28109 1.50884 1.26031 0.95695 1.03673 0.94214 0.85393 0.78142 0.77450 0.79431 1.18998 1.21019 1.18676 1.21468 0.93836 0.91359 1.51753 0.91047 1.19209 0.94323 0.92832 0.94955 1.21847 0.94193 0.80220 1.03259 1.44508 1.47468 1.19489 1.05191 1.22263 1.02465 0.93281 0.92024 1.21702 1.07879 1.00922 0.92231 1.18991 1.09509 0.97649 0.94425 1.18457 0.98622 0.93475 0.89024 1.19987 1.10905 1.03046 0.90131 1.20737 0.94494 0.92771 0.99104 1.20476 1.12183 1.01667 0.93509 1.17250 0.89649 0.86163 0.91716 1.42260 1.63373 1.22728 1.11456 0.92631 0.99684 0.99011 0.88576 0.90649 0.79919 0.81364 0.88197 0.83942 0.83777 0.76695 0.76087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.02 1.33 5.30 29.85 0.16 1.49 16 10 C 0.13 5.35 5.94 86.38 0.51 5.87 16 11 N -0.49 -19.51 2.78 -515.87 -1.44 -20.95 16 12 C 0.02 0.84 11.28 82.97 0.94 1.77 16 13 C -0.20 -6.26 10.86 23.50 0.26 -6.00 16 14 C -0.20 -6.90 6.27 -20.10 -0.13 -7.03 16 15 C 0.11 4.56 6.81 39.02 0.27 4.83 16 16 C -0.22 -8.39 9.98 22.39 0.22 -8.16 16 17 C -0.05 -1.60 10.00 22.27 0.22 -1.38 16 18 C -0.25 -7.06 9.88 22.41 0.22 -6.84 16 19 C 0.26 7.52 6.78 38.41 0.26 7.78 16 20 N -0.86 -16.72 9.09 -50.99 -0.46 -17.18 16 21 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H 0.10 3.65 8.12 -2.39 -0.02 3.63 16 25 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.18 5.05 8.06 -2.91 -0.02 5.02 16 27 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.10 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.40 6.70 8.66 -92.71 -0.80 5.90 16 32 H 0.41 5.65 8.84 -92.71 -0.82 4.83 16 Total: -1.00 -70.13 280.07 3.55 -66.59 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.49 Total: 20.54 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.63 Total: -37.49 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -1.61 Total: -95.35 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.13 3.55 -66.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070569147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.335 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds