Wall clock time and date at job start Mon Mar 30 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36750 * 125.04550 * 2 1 4 4 H 0.97004 * 125.07986 * 359.97438 * 3 2 1 5 5 C 1.37838 * 109.83937 * 180.02562 * 3 2 1 6 6 C 1.40483 * 107.18350 * 359.97438 * 5 3 2 7 7 C 1.39783 * 119.97419 * 179.97438 * 6 5 3 8 8 C 1.36638 * 119.90112 * 0.04163 * 7 6 5 9 9 C 1.38752 * 120.58944 * 359.96034 * 8 7 6 10 10 C 1.38415 * 120.57305 * 0.02562 * 9 8 7 11 11 N 1.39831 * 120.17314 * 179.97438 * 10 9 8 12 12 C 1.34262 * 125.04421 * 179.69450 * 2 1 3 13 13 C 1.50701 * 126.49204 * 359.96921 * 12 2 1 14 14 C 1.50703 * 109.46926 * 90.02238 * 13 12 2 15 15 H 1.08000 * 119.99845 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00104 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00000 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00141 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46894 * 59.99868 * 18 16 14 20 20 H 1.48496 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46637 * 300.00021 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.02473 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02573 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02554 * 1 2 3 25 25 H 1.07999 * 120.04994 * 180.02562 * 7 6 5 26 26 H 1.07994 * 119.70809 * 179.97438 * 8 7 6 27 27 H 1.08000 * 119.71127 * 179.97438 * 9 8 7 28 28 H 0.96994 * 120.00028 * 180.02562 * 11 10 9 29 29 H 0.97002 * 119.99597 * 0.02562 * 11 10 9 30 30 H 1.08996 * 109.47279 * 210.02438 * 13 12 2 31 31 H 1.09001 * 109.47246 * 330.02508 * 13 12 2 32 32 H 0.96996 * 120.00366 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1196 0.0000 4 1 1.9625 2.0318 -0.0004 5 6 3.6224 0.7580 -0.0006 6 6 3.6709 -0.6460 -0.0004 7 6 4.9051 -1.3021 -0.0014 8 6 6.0626 -0.5760 -0.0017 9 6 6.0260 0.8110 -0.0019 10 6 4.8161 1.4834 -0.0012 11 7 4.7889 2.8814 -0.0009 12 6 2.2780 -1.0992 0.0059 13 6 1.8007 -2.5286 0.0141 14 6 1.6415 -3.0132 -1.4039 15 1 1.8641 -2.3524 -2.2286 16 6 1.2117 -4.3002 -1.6485 17 7 0.9401 -5.1048 -0.6443 18 14 1.0151 -4.9012 -3.4063 19 1 2.3223 -4.8204 -4.1061 20 1 0.5435 -6.3093 -3.3981 21 1 0.0225 -4.0512 -4.1118 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5142 25 1 4.9438 -2.3814 -0.0016 26 1 7.0144 -1.0862 -0.0021 27 1 6.9495 1.3709 -0.0018 28 1 3.9397 3.3500 0.0000 29 1 5.6194 3.3826 -0.0015 30 1 2.5298 -3.1521 0.5315 31 1 0.8415 -2.5884 0.5283 32 1 0.6381 -6.0104 -0.8162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074215005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:47 Heat of formation + Delta-G solvation = 41.885859 kcal Electronic energy + Delta-G solvation = -15407.714370 eV Core-core repulsion = 12946.699906 eV Total energy + Delta-G solvation = -2461.014464 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.66021 -36.91786 -34.22553 -33.18682 -31.15339 -30.15070 -27.83949 -27.25258 -25.69042 -22.83346 -21.53323 -20.68329 -18.17905 -17.47937 -16.30752 -16.08831 -15.76960 -14.48125 -14.32309 -14.17494 -14.07059 -13.20627 -12.62747 -12.31670 -12.20073 -11.88681 -11.56648 -11.25418 -11.19147 -10.87114 -10.78150 -10.54574 -10.20562 -10.10843 -9.56995 -9.30354 -8.28741 -7.98673 -7.36889 -6.41856 -5.88426 -3.92653 1.89649 2.26489 3.39042 3.42732 3.44465 3.55604 3.64981 4.08814 4.52651 4.64704 5.34201 5.42221 5.48399 5.57622 5.76988 5.97703 6.02184 6.14709 6.21939 6.41566 6.53698 6.58315 6.72172 7.02119 7.26907 7.39920 7.49678 7.63589 7.77783 7.88146 7.91614 8.05774 8.06529 8.23958 8.52904 9.12389 9.70031 11.18814 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.007675 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.464193 B = 3647.141109 C = 4141.189969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.044 3.956 3 N -0.598 5.598 4 H 0.399 0.601 5 C 0.035 3.965 6 C -0.060 4.060 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.199 4.199 10 C 0.197 3.803 11 N -0.890 5.890 12 C -0.113 4.113 13 C 0.083 3.917 14 C -0.501 4.501 15 H 0.053 0.947 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.387 0.613 29 H 0.394 0.606 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 13.717 2.114 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 N -0.203 5.203 4 H 0.234 0.766 5 C -0.073 4.073 6 C -0.066 4.066 7 C -0.127 4.127 8 C -0.137 4.137 9 C -0.224 4.224 10 C 0.094 3.906 11 N -0.432 5.432 12 C -0.119 4.119 13 C 0.046 3.954 14 C -0.540 4.540 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.213 0.787 29 H 0.222 0.778 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.448 13.545 2.155 14.419 hybrid contribution -0.199 0.523 -1.075 1.212 sum 4.249 14.069 1.080 14.736 Atomic orbital electron populations 1.20297 0.88321 1.02376 1.02598 1.19997 0.93035 0.85198 1.07884 1.41360 1.03600 1.07278 1.68072 0.76582 1.17754 0.83510 0.94355 1.11697 1.19104 0.94017 0.90521 1.02964 1.20202 0.90342 0.99829 1.02331 1.20221 0.97519 0.92913 1.03013 1.20026 0.94203 0.94526 1.13628 1.16731 0.91002 0.82755 1.00113 1.42207 1.09756 1.03290 1.87933 1.20986 0.89339 0.96780 1.04830 1.17686 0.96031 0.84672 0.97004 1.21092 1.43817 0.97074 0.91997 0.92832 1.24982 0.95785 0.96824 0.96766 1.69945 1.46343 1.07097 1.30366 0.86687 0.78502 0.77601 0.85406 1.20277 1.21365 1.20400 0.91127 0.93150 0.89470 0.86129 0.86881 0.86980 0.78668 0.77822 0.95611 0.95610 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.18 36.01 0.37 -0.92 16 2 C 0.04 0.86 7.08 -81.80 -0.58 0.28 16 3 N -0.60 -10.02 6.08 -6.84 -0.04 -10.06 16 4 H 0.40 5.11 8.87 -40.82 -0.36 4.75 16 5 C 0.04 0.66 7.13 -83.78 -0.60 0.06 16 6 C -0.06 -1.29 6.35 -105.15 -0.67 -1.96 16 7 C -0.11 -2.15 10.05 -39.58 -0.40 -2.55 16 8 C -0.12 -1.97 9.97 -39.97 -0.40 -2.37 16 9 C -0.20 -3.10 9.87 -39.33 -0.39 -3.49 16 10 C 0.20 3.13 6.77 -83.61 -0.57 2.56 16 11 N -0.89 -10.15 9.10 32.50 0.30 -9.85 16 12 C -0.11 -2.60 5.50 -102.71 -0.57 -3.17 16 13 C 0.08 2.21 5.26 -29.03 -0.15 2.06 16 14 C -0.50 -14.32 9.09 -34.44 -0.31 -14.64 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.53 7.03 -51.93 -0.37 1.16 16 25 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.39 3.78 8.76 -40.82 -0.36 3.42 16 29 H 0.39 3.55 8.85 -40.82 -0.36 3.19 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.70 7.05 -51.93 -0.37 0.33 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -32.19 277.24 -8.10 -40.29 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.89 Total: 7.18 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -4.36 Total: -22.60 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.99 Total: -45.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.19 -8.10 -40.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074215005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.173 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds