Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36750 * 125.04550 * 2 1 4 4 H 0.97004 * 125.07986 * 359.97438 * 3 2 1 5 5 C 1.37838 * 109.83937 * 180.02562 * 3 2 1 6 6 C 1.40483 * 107.18350 * 359.97438 * 5 3 2 7 7 C 1.39783 * 119.97419 * 179.97438 * 6 5 3 8 8 C 1.36638 * 119.90112 * 0.04163 * 7 6 5 9 9 C 1.38752 * 120.58944 * 359.96034 * 8 7 6 10 10 C 1.38415 * 120.57305 * 0.02562 * 9 8 7 11 11 N 1.39831 * 120.17314 * 179.97438 * 10 9 8 12 12 C 1.34262 * 125.04421 * 179.69450 * 2 1 3 13 13 C 1.50701 * 126.49204 * 359.96921 * 12 2 1 14 14 C 1.50703 * 109.46926 * 90.02238 * 13 12 2 15 15 H 1.08000 * 119.99845 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00104 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00000 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00141 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46894 * 59.99868 * 18 16 14 20 20 H 1.48496 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46637 * 300.00021 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.02473 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02573 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02554 * 1 2 3 25 25 H 1.07999 * 120.04994 * 180.02562 * 7 6 5 26 26 H 1.07994 * 119.70809 * 179.97438 * 8 7 6 27 27 H 1.08000 * 119.71127 * 179.97438 * 9 8 7 28 28 H 0.96994 * 120.00028 * 180.02562 * 11 10 9 29 29 H 0.97002 * 119.99597 * 0.02562 * 11 10 9 30 30 H 1.08996 * 109.47279 * 210.02438 * 13 12 2 31 31 H 1.09001 * 109.47246 * 330.02508 * 13 12 2 32 32 H 0.96996 * 120.00366 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.1196 0.0000 4 1 1.9625 2.0318 -0.0004 5 6 3.6224 0.7580 -0.0006 6 6 3.6709 -0.6460 -0.0004 7 6 4.9051 -1.3021 -0.0014 8 6 6.0626 -0.5760 -0.0017 9 6 6.0260 0.8110 -0.0019 10 6 4.8161 1.4834 -0.0012 11 7 4.7889 2.8814 -0.0009 12 6 2.2780 -1.0992 0.0059 13 6 1.8007 -2.5286 0.0141 14 6 1.6415 -3.0132 -1.4039 15 1 1.8641 -2.3524 -2.2286 16 6 1.2117 -4.3002 -1.6485 17 7 0.9401 -5.1048 -0.6443 18 14 1.0151 -4.9012 -3.4063 19 1 2.3223 -4.8204 -4.1061 20 1 0.5435 -6.3093 -3.3981 21 1 0.0225 -4.0512 -4.1118 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5142 25 1 4.9438 -2.3814 -0.0016 26 1 7.0144 -1.0862 -0.0021 27 1 6.9495 1.3709 -0.0018 28 1 3.9397 3.3500 0.0000 29 1 5.6194 3.3826 -0.0015 30 1 2.5298 -3.1521 0.5315 31 1 0.8415 -2.5884 0.5283 32 1 0.6381 -6.0104 -0.8162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074215005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = 20.256090 kcal Electronic energy + Delta-G solvation = -15408.652307 eV Core-core repulsion = 12946.699906 eV Total energy + Delta-G solvation = -2461.952401 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.09933 -38.25349 -35.67548 -35.07238 -32.87540 -31.60515 -29.42739 -28.72709 -27.27426 -24.88161 -22.89920 -22.05088 -19.76715 -18.79276 -18.38140 -17.55932 -16.96231 -16.45008 -15.71268 -15.63746 -15.44777 -14.64149 -14.28681 -13.93998 -13.79897 -13.70407 -13.07899 -12.94686 -12.61665 -12.54232 -12.48541 -12.22526 -11.89073 -11.64248 -11.46093 -11.37303 -10.52127 -9.41970 -8.81515 -8.16169 -7.70987 -6.23051 0.48794 0.87220 1.39819 1.43357 1.51203 1.96690 2.29800 2.46695 3.04150 3.17839 3.18861 3.98788 4.15407 4.24806 4.51964 4.56125 4.68773 4.77142 4.80975 5.04345 5.16063 5.16938 5.28260 5.42578 5.52662 5.70551 5.82579 5.89102 6.03317 6.17380 6.30361 6.36634 6.66797 6.87334 6.92844 7.07939 7.44232 8.97380 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.007675 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.464193 B = 3647.141109 C = 4141.189969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.578 5.578 4 H 0.423 0.577 5 C 0.023 3.977 6 C -0.093 4.093 7 C -0.155 4.155 8 C -0.099 4.099 9 C -0.203 4.203 10 C 0.212 3.788 11 N -0.869 5.869 12 C -0.177 4.177 13 C 0.100 3.900 14 C -0.516 4.516 15 H 0.045 0.955 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.266 1.266 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.139 0.861 27 H 0.152 0.848 28 H 0.399 0.601 29 H 0.411 0.589 30 H -0.014 1.014 31 H 0.006 0.994 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 16.823 1.117 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 N -0.184 5.184 4 H 0.262 0.738 5 C -0.086 4.086 6 C -0.099 4.099 7 C -0.176 4.176 8 C -0.119 4.119 9 C -0.228 4.228 10 C 0.107 3.893 11 N -0.412 5.412 12 C -0.184 4.184 13 C 0.063 3.937 14 C -0.554 4.554 15 H 0.063 0.937 16 C -0.193 4.193 17 N -0.573 5.573 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.191 1.191 22 H 0.093 0.907 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.157 0.843 27 H 0.170 0.830 28 H 0.227 0.773 29 H 0.242 0.758 30 H 0.005 0.995 31 H 0.025 0.975 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.146 16.741 1.161 17.553 hybrid contribution -0.341 -0.331 -0.707 0.851 sum 4.806 16.410 0.454 17.106 Atomic orbital electron populations 1.20363 0.86240 1.03631 1.03226 1.20237 0.94257 0.85110 1.04646 1.41181 1.02765 1.07691 1.66742 0.73845 1.17889 0.84858 0.93341 1.12519 1.19314 0.93655 0.92619 1.04284 1.20193 0.91748 0.98962 1.06730 1.20536 0.97220 0.93921 1.00221 1.20438 0.95681 0.93991 1.12717 1.16823 0.89959 0.84657 0.97875 1.42133 1.11493 1.01395 1.86152 1.20728 0.91473 0.95837 1.10318 1.17282 0.93860 0.87145 0.95439 1.21345 1.43856 0.97477 0.92737 0.93668 1.25860 0.95228 0.96855 1.01310 1.70075 1.46990 1.07479 1.32712 0.85599 0.78691 0.77434 0.79922 1.19942 1.20415 1.19074 0.90657 0.88720 0.91378 0.88916 0.84303 0.83037 0.77316 0.75833 0.99546 0.97536 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.47 10.18 71.24 0.73 -1.74 16 2 C 0.07 2.55 7.08 40.88 0.29 2.84 16 3 N -0.58 -18.22 6.08 -175.56 -1.07 -19.28 16 4 H 0.42 9.28 8.87 -92.71 -0.82 8.45 16 5 C 0.02 0.81 7.13 39.09 0.28 1.09 16 6 C -0.09 -4.17 6.35 -20.21 -0.13 -4.29 16 7 C -0.16 -6.62 10.05 22.27 0.22 -6.39 16 8 C -0.10 -3.27 9.97 22.02 0.22 -3.05 16 9 C -0.20 -5.66 9.87 22.44 0.22 -5.44 16 10 C 0.21 6.07 6.77 38.25 0.26 6.33 16 11 N -0.87 -15.74 9.10 -51.10 -0.46 -16.21 16 12 C -0.18 -8.59 5.50 -18.62 -0.10 -8.69 16 13 C 0.10 5.74 5.26 29.10 0.15 5.89 16 14 C -0.52 -31.03 9.09 25.60 0.23 -30.80 16 15 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 16 C 0.00 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 18 Si 0.96 45.95 29.54 68.60 2.03 47.97 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.07 2.45 7.03 -2.38 -0.02 2.43 16 25 H 0.09 4.26 8.06 -2.91 -0.02 4.24 16 26 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 27 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.40 5.84 8.76 -92.71 -0.81 5.03 16 29 H 0.41 5.21 8.85 -92.71 -0.82 4.39 16 30 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.01 0.38 7.05 -2.39 -0.02 0.36 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.33 277.24 2.32 -72.01 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -1.29 Total: 16.68 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 2.83 Total: -43.50 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -1.25 Total: -93.16 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.33 2.32 -72.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074215005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.264 kcal (2) G-P(sol) polarization free energy of solvation -74.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds