Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46635 * 2 1 4 4 C 1.39043 * 119.62121 * 269.97544 * 3 2 1 5 5 C 1.37964 * 120.57448 * 179.97438 * 4 3 2 6 6 C 1.38719 * 119.76361 * 0.02562 * 5 4 3 7 7 C 1.41334 * 119.78051 * 0.02562 * 6 5 4 8 8 C 1.36353 * 119.62093 * 90.00179 * 3 2 1 9 9 N 1.33981 * 107.52855 * 179.76453 * 7 6 5 10 10 C 1.32470 * 109.78108 * 0.43017 * 9 7 6 11 11 C 1.40183 * 125.30363 * 179.82434 * 10 9 7 12 12 H 1.07999 * 119.99811 * 185.36594 * 11 10 9 13 13 C 1.40352 * 120.00008 * 5.08973 * 11 10 9 14 14 N 1.30586 * 119.99647 * 354.19489 * 13 11 10 15 15 Si 1.86797 * 119.99959 * 174.19800 * 13 11 10 16 16 H 1.48499 * 109.46987 * 94.98276 * 15 13 11 17 17 H 1.48500 * 109.46861 * 214.98195 * 15 13 11 18 18 H 1.48499 * 109.47177 * 334.98330 * 15 13 11 19 19 N 1.37849 * 109.38999 * 359.56556 * 10 9 7 20 20 C 1.46500 * 126.54034 * 180.26210 * 19 10 9 21 21 H 1.08990 * 109.47253 * 299.99633 * 1 2 3 22 22 H 1.09000 * 109.47076 * 60.00559 * 1 2 3 23 23 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46856 * 239.99857 * 2 1 3 25 25 H 1.09002 * 109.46798 * 120.00168 * 2 1 3 26 26 H 1.08004 * 119.71228 * 0.02562 * 4 3 2 27 27 H 1.07992 * 120.11677 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.07424 * 0.02562 * 8 3 2 29 29 H 0.96998 * 119.99357 * 179.97438 * 14 13 11 30 30 H 1.08995 * 109.47460 * 89.97028 * 20 19 10 31 31 H 1.09001 * 109.47200 * 209.97566 * 20 19 10 32 32 H 1.09008 * 109.46473 * 329.97359 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0686 -1.2087 5 6 2.7210 3.3694 -1.2317 6 6 2.9566 4.0376 -0.0391 7 6 2.7252 3.3812 1.1910 8 6 2.2569 2.0562 1.1853 9 7 3.0339 4.2407 2.1713 10 6 3.4331 5.3911 1.6498 11 6 3.8300 6.5184 2.3825 12 1 4.0574 7.4421 1.8711 13 6 3.9262 6.4483 3.7809 14 7 3.5383 5.3710 4.4088 15 14 4.6089 7.8960 4.7439 16 1 3.4886 8.7478 5.2177 17 1 5.3781 7.3953 5.9113 18 1 5.5027 8.6957 3.8682 19 7 3.4029 5.3050 0.2743 20 6 3.7740 6.3582 -0.6739 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0782 1.5492 -2.1377 27 1 2.8964 3.8656 -2.1747 28 1 2.0757 1.5422 2.1178 29 1 3.6051 5.3225 5.3753 30 1 4.8354 6.2784 -0.9086 31 1 3.1904 6.2465 -1.5877 32 1 3.5722 7.3335 -0.2308 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074296370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 50.712952 kcal Electronic energy + Delta-G solvation = -15424.481511 eV Core-core repulsion = 12963.849818 eV Total energy + Delta-G solvation = -2460.631692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32729 -36.86522 -33.75041 -32.75661 -32.30699 -28.80599 -28.49742 -25.92539 -25.67173 -22.77149 -21.24839 -19.78739 -19.53584 -16.90153 -15.99503 -15.74638 -14.71747 -14.43286 -14.36916 -13.59645 -13.06954 -13.04581 -12.55355 -12.53883 -12.12834 -11.92607 -11.71649 -11.40838 -11.35143 -10.89791 -10.67913 -10.42343 -10.32557 -10.21330 -10.10935 -9.26731 -8.95976 -7.90037 -7.14395 -6.81636 -6.67715 -4.61811 2.26778 2.67459 2.98741 3.02484 3.06453 3.80066 4.12844 4.15363 4.92333 5.39929 5.45834 5.49331 5.59360 5.72942 5.86710 5.95108 6.01445 6.04902 6.08812 6.21232 6.27968 6.46299 6.57827 6.60016 6.78033 6.88604 7.00755 7.23074 7.49576 7.67150 7.74974 7.93111 7.99672 8.32846 8.64221 9.03288 9.95861 10.21996 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.007238 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.487472 B = 3867.411400 C = 4514.949108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.090 4.090 4 C -0.175 4.175 5 C -0.102 4.102 6 C -0.009 4.009 7 C 0.111 3.889 8 C -0.123 4.123 9 N -0.536 5.536 10 C 0.418 3.582 11 C -0.442 4.442 12 H 0.087 0.913 13 C 0.077 3.923 14 N -0.716 5.716 15 Si 0.918 3.082 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.261 1.261 19 N -0.545 5.545 20 C 0.105 3.895 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.279 0.721 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -1.603 -5.835 6.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.093 4.093 4 C -0.196 4.196 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.017 4.017 8 C -0.145 4.145 9 N -0.260 5.260 10 C 0.182 3.818 11 C -0.480 4.480 12 H 0.105 0.895 13 C -0.150 4.150 14 N -0.338 5.338 15 Si 0.742 3.258 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.185 1.185 19 N -0.242 5.242 20 C -0.039 4.039 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.098 -1.760 -4.842 5.267 hybrid contribution 0.411 0.953 -0.555 1.177 sum -0.687 -0.807 -5.397 5.500 Atomic orbital electron populations 1.21737 0.95773 1.00447 1.02130 1.20373 0.95391 0.93817 1.01467 1.18932 1.02205 0.95263 0.92876 1.20135 1.08582 0.94643 0.96210 1.19566 1.04178 0.94829 0.93771 1.18906 1.08350 0.87609 0.96743 1.19544 0.98188 0.94584 0.89377 1.19584 1.05644 0.92549 0.96692 1.71385 1.28459 1.00161 1.25988 1.20472 0.90920 0.93968 0.76487 1.18492 1.42878 0.95331 0.91283 0.89490 1.25870 0.94230 0.97190 0.97743 1.69984 1.28458 1.25582 1.09782 0.86139 0.79568 0.80765 0.79336 1.19346 1.19841 1.18479 1.45432 1.61004 1.10415 1.07318 1.21417 0.99446 0.90926 0.92152 0.92628 0.92901 0.93435 0.92141 0.91945 0.87891 0.88628 0.87482 0.90977 0.93187 0.92230 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 37.16 0.37 -1.63 16 2 C -0.07 -1.14 6.04 -27.88 -0.17 -1.30 16 3 C -0.09 -1.79 5.10 -105.00 -0.54 -2.32 16 4 C -0.17 -3.40 9.68 -39.38 -0.38 -3.78 16 5 C -0.10 -2.14 10.04 -39.50 -0.40 -2.54 16 6 C -0.01 -0.21 6.88 -83.75 -0.58 -0.79 16 7 C 0.11 2.96 7.21 -84.89 -0.61 2.35 16 8 C -0.12 -2.88 9.68 -39.40 -0.38 -3.26 16 9 N -0.54 -15.75 9.35 -10.31 -0.10 -15.85 16 10 C 0.42 11.55 7.41 -155.68 -1.15 10.39 16 11 C -0.44 -11.48 9.00 -38.06 -0.34 -11.83 16 12 H 0.09 2.04 7.06 -52.49 -0.37 1.66 16 13 C 0.08 1.93 5.49 -17.29 -0.09 1.83 16 14 N -0.72 -19.22 11.88 55.57 0.66 -18.56 16 15 Si 0.92 18.01 29.57 -169.99 -5.03 12.98 16 16 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 19 N -0.55 -13.26 3.26 -120.85 -0.39 -13.66 16 20 C 0.10 1.92 10.95 59.85 0.66 2.58 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 26 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 27 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.11 2.41 8.06 -52.48 -0.42 1.99 16 29 H 0.28 6.72 8.29 -40.82 -0.34 6.39 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.28 7.27 -51.92 -0.38 0.90 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -30.76 276.40 -8.41 -39.18 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.10 Total: 2.04 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.62 Total: -10.30 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.17 Total: -48.06 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.76 -8.41 -39.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074296370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.890 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds