Wall clock time and date at job start Mon Mar 30 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46635 * 2 1 4 4 C 1.39043 * 119.62121 * 269.97544 * 3 2 1 5 5 C 1.37964 * 120.57448 * 179.97438 * 4 3 2 6 6 C 1.38719 * 119.76361 * 0.02562 * 5 4 3 7 7 C 1.41334 * 119.78051 * 0.02562 * 6 5 4 8 8 C 1.36353 * 119.62093 * 90.00179 * 3 2 1 9 9 N 1.33981 * 107.52855 * 179.76453 * 7 6 5 10 10 C 1.32470 * 109.78108 * 0.43017 * 9 7 6 11 11 C 1.40183 * 125.30363 * 179.82434 * 10 9 7 12 12 H 1.07999 * 119.99811 * 185.36594 * 11 10 9 13 13 C 1.40352 * 120.00008 * 5.08973 * 11 10 9 14 14 N 1.30586 * 119.99647 * 354.19489 * 13 11 10 15 15 Si 1.86797 * 119.99959 * 174.19800 * 13 11 10 16 16 H 1.48499 * 109.46987 * 94.98276 * 15 13 11 17 17 H 1.48500 * 109.46861 * 214.98195 * 15 13 11 18 18 H 1.48499 * 109.47177 * 334.98330 * 15 13 11 19 19 N 1.37849 * 109.38999 * 359.56556 * 10 9 7 20 20 C 1.46500 * 126.54034 * 180.26210 * 19 10 9 21 21 H 1.08990 * 109.47253 * 299.99633 * 1 2 3 22 22 H 1.09000 * 109.47076 * 60.00559 * 1 2 3 23 23 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46856 * 239.99857 * 2 1 3 25 25 H 1.09002 * 109.46798 * 120.00168 * 2 1 3 26 26 H 1.08004 * 119.71228 * 0.02562 * 4 3 2 27 27 H 1.07992 * 120.11677 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.07424 * 0.02562 * 8 3 2 29 29 H 0.96998 * 119.99357 * 179.97438 * 14 13 11 30 30 H 1.08995 * 109.47460 * 89.97028 * 20 19 10 31 31 H 1.09001 * 109.47200 * 209.97566 * 20 19 10 32 32 H 1.09008 * 109.46473 * 329.97359 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0686 -1.2087 5 6 2.7210 3.3694 -1.2317 6 6 2.9566 4.0376 -0.0391 7 6 2.7252 3.3812 1.1910 8 6 2.2569 2.0562 1.1853 9 7 3.0339 4.2407 2.1713 10 6 3.4331 5.3911 1.6498 11 6 3.8300 6.5184 2.3825 12 1 4.0574 7.4421 1.8711 13 6 3.9262 6.4483 3.7809 14 7 3.5383 5.3710 4.4088 15 14 4.6089 7.8960 4.7439 16 1 3.4886 8.7478 5.2177 17 1 5.3781 7.3953 5.9113 18 1 5.5027 8.6957 3.8682 19 7 3.4029 5.3050 0.2743 20 6 3.7740 6.3582 -0.6739 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0782 1.5492 -2.1377 27 1 2.8964 3.8656 -2.1747 28 1 2.0757 1.5422 2.1178 29 1 3.6051 5.3225 5.3753 30 1 4.8354 6.2784 -0.9086 31 1 3.1904 6.2465 -1.5877 32 1 3.5722 7.3335 -0.2308 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074296370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:15 Heat of formation + Delta-G solvation = 33.206681 kcal Electronic energy + Delta-G solvation = -15425.240640 eV Core-core repulsion = 12963.849818 eV Total energy + Delta-G solvation = -2461.390821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13252 -38.49749 -35.55917 -34.44454 -33.85419 -30.51043 -30.19855 -27.69971 -27.25196 -24.21009 -22.99090 -21.49437 -21.27628 -18.74737 -17.71744 -17.47371 -16.36633 -16.12482 -15.90422 -15.01179 -14.75904 -14.58820 -14.08066 -14.04756 -13.61758 -13.46462 -13.24736 -13.01984 -12.85102 -12.55679 -12.19831 -11.95100 -11.87227 -11.72221 -11.59128 -11.01314 -10.76739 -9.83203 -8.95842 -8.59328 -8.51307 -6.55988 0.50486 0.96901 1.40926 1.45471 1.58245 2.16107 2.33583 2.46302 3.14626 3.58288 3.90021 4.07820 4.16845 4.36008 4.44880 4.52281 4.63634 4.65658 4.69348 4.75330 4.89943 5.04096 5.11215 5.18111 5.22099 5.24904 5.47144 5.55430 5.68385 5.96073 5.99811 6.16645 6.24633 6.53188 6.77767 7.19466 8.06159 8.42161 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.007238 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.487472 B = 3867.411400 C = 4514.949108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.083 4.083 4 C -0.159 4.159 5 C -0.102 4.102 6 C -0.030 4.030 7 C 0.054 3.946 8 C -0.145 4.145 9 N -0.587 5.587 10 C 0.386 3.614 11 C -0.470 4.470 12 H 0.105 0.895 13 C 0.028 3.972 14 N -0.771 5.771 15 Si 1.004 2.996 16 H -0.261 1.261 17 H -0.271 1.271 18 H -0.247 1.247 19 N -0.550 5.550 20 C 0.098 3.902 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.097 0.903 29 H 0.283 0.717 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -1.754 -8.162 8.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.085 4.085 4 C -0.180 4.180 5 C -0.124 4.124 6 C -0.137 4.137 7 C -0.071 4.071 8 C -0.167 4.167 9 N -0.313 5.313 10 C 0.147 3.853 11 C -0.508 4.508 12 H 0.123 0.877 13 C -0.194 4.194 14 N -0.394 5.394 15 Si 0.823 3.177 16 H -0.185 1.185 17 H -0.195 1.195 18 H -0.170 1.170 19 N -0.246 5.246 20 C -0.044 4.044 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.166 0.834 27 H 0.147 0.853 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.105 -1.930 -7.230 7.564 hybrid contribution 0.334 0.808 -0.006 0.874 sum -0.770 -1.122 -7.236 7.362 Atomic orbital electron populations 1.21707 0.94377 1.02228 1.01423 1.20471 0.96458 0.90935 1.03041 1.19450 1.00055 0.97223 0.91769 1.20731 1.05548 0.94016 0.97657 1.20035 1.03162 0.95413 0.93767 1.19329 1.09173 0.87963 0.97278 1.20098 1.00603 0.96053 0.90347 1.19820 1.06818 0.91988 0.98042 1.71232 1.30020 1.01695 1.28309 1.20873 0.91885 0.94251 0.78271 1.18981 1.43809 0.95733 0.92280 0.87738 1.27044 0.93690 1.00203 0.98448 1.70134 1.30498 1.28471 1.10294 0.84877 0.78915 0.76473 0.77435 1.18513 1.19544 1.17003 1.45650 1.60481 1.11385 1.07074 1.21730 1.00788 0.89809 0.92073 0.94559 0.92423 0.90455 0.89200 0.91791 0.83386 0.85255 0.88512 0.90627 0.91737 0.89519 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.89 71.98 0.71 -2.79 16 2 C -0.07 -2.01 6.04 29.85 0.18 -1.83 16 3 C -0.08 -3.14 5.10 -20.11 -0.10 -3.24 16 4 C -0.16 -5.63 9.68 22.40 0.22 -5.42 16 5 C -0.10 -4.06 10.04 22.32 0.22 -3.84 16 6 C -0.03 -1.48 6.88 39.05 0.27 -1.21 16 7 C 0.05 3.05 7.21 40.14 0.29 3.34 16 8 C -0.15 -7.00 9.68 22.39 0.22 -6.78 16 9 N -0.59 -36.64 9.35 -186.52 -1.74 -38.38 16 10 C 0.39 22.29 7.41 133.69 0.99 23.28 16 11 C -0.47 -25.24 9.00 23.26 0.21 -25.03 16 12 H 0.10 4.95 7.06 -2.91 -0.02 4.93 16 13 C 0.03 1.46 5.49 85.39 0.47 1.93 16 14 N -0.77 -43.68 11.88 21.89 0.26 -43.42 16 15 Si 1.00 37.53 29.57 68.60 2.03 39.55 16 16 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 17 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 19 N -0.55 -27.14 3.26 -536.25 -1.75 -28.88 16 20 C 0.10 3.48 10.95 127.77 1.40 4.88 16 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 25 H 0.06 1.79 8.07 -2.39 -0.02 1.77 16 26 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 27 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 28 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.28 14.44 8.29 -92.71 -0.77 13.68 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.08 2.76 7.27 -2.38 -0.02 2.74 16 Total: -1.00 -72.09 276.40 4.98 -67.11 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.11 Total: 20.73 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 5.07 Total: -16.70 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.23 Total: -110.69 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.55 kcal Total: -72.09 4.98 -67.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074296370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.313 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds