Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47100 * 239.99864 * 3 2 1 5 5 H 1.48501 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47428 * 119.99509 * 3 2 1 7 7 C 1.37881 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99706 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47543 * 59.99704 * 9 7 2 11 11 N 1.46902 * 109.46971 * 299.99238 * 9 7 2 12 12 C 1.53004 * 109.46926 * 179.97438 * 9 7 2 13 13 C 1.50694 * 109.46881 * 184.99594 * 12 9 7 14 14 C 1.34242 * 126.50507 * 264.68739 * 13 12 9 15 15 N 1.36830 * 109.93296 * 180.26494 * 14 13 12 16 16 H 0.96997 * 125.06625 * 180.02562 * 15 14 13 17 17 C 1.37691 * 109.87320 * 0.02562 * 15 14 13 18 18 C 1.39128 * 133.50831 * 179.97438 * 17 15 14 19 19 C 1.37752 * 119.77814 * 180.02562 * 18 17 15 20 20 C 1.38836 * 120.66720 * 359.97438 * 19 18 17 21 21 C 1.36624 * 120.52467 * 0.02562 * 20 19 18 22 22 C 1.39627 * 119.76669 * 0.02562 * 21 20 19 23 23 H 0.96994 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.00904 * 110.99958 * 176.04562 * 11 9 7 25 25 H 1.00894 * 111.00416 * 300.00279 * 11 9 7 26 26 H 1.08995 * 109.46850 * 65.00014 * 12 9 7 27 27 H 1.08996 * 109.46850 * 304.99574 * 12 9 7 28 28 H 1.08002 * 125.03001 * 0.22732 * 14 13 12 29 29 H 1.08000 * 120.11191 * 0.04546 * 18 17 15 30 30 H 1.07995 * 119.66456 * 180.02562 * 19 18 17 31 31 H 1.07997 * 119.73077 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.11281 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2454 -3.6621 0.0005 13 6 1.4960 -4.9636 -0.1232 14 6 1.1142 -5.7642 0.8845 15 7 0.4616 -6.8597 0.3883 16 1 0.0926 -7.5788 0.9245 17 6 0.4067 -6.7893 -0.9858 18 6 -0.1282 -7.6182 -1.9667 19 6 -0.0202 -7.2655 -3.2940 20 6 0.6176 -6.0893 -3.6644 21 6 1.1500 -5.2607 -2.7176 22 6 1.0528 -5.5992 -1.3665 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1578 -3.4134 1.1913 25 1 0.9639 -2.5251 2.0390 26 1 2.8115 -3.6560 0.9319 27 1 2.9294 -3.5552 -0.8413 28 1 1.2958 -5.5722 1.9317 29 1 -0.6269 -8.5349 -1.6886 30 1 -0.4364 -7.9101 -4.0539 31 1 0.6941 -5.8278 -4.7095 32 1 1.6443 -4.3471 -3.0132 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075601352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = 51.795306 kcal Electronic energy + Delta-G solvation = -15370.762971 eV Core-core repulsion = 12910.178213 eV Total energy + Delta-G solvation = -2460.584758 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.90579 -36.66185 -35.16023 -32.17510 -30.96157 -29.21146 -28.70936 -26.81786 -24.75262 -22.53894 -21.45470 -20.50183 -18.73248 -17.39675 -16.23311 -15.98306 -15.16388 -14.54047 -14.17222 -14.07057 -13.71600 -13.49661 -12.87810 -12.38985 -12.26732 -11.99959 -11.52927 -11.37076 -11.15770 -10.83168 -10.68909 -10.50188 -10.13239 -9.69291 -9.15540 -8.84670 -8.29316 -7.90526 -7.30517 -6.74125 -5.74571 -3.89367 1.44220 1.93197 3.10372 3.41211 3.42713 3.46095 3.48254 4.24154 4.57289 5.02444 5.16004 5.28346 5.42389 5.50179 5.66893 5.74190 5.91316 6.09442 6.25592 6.30787 6.46209 6.57536 6.77815 6.87507 6.89027 6.96421 7.08799 7.27472 7.50015 7.75513 7.84593 8.01284 8.38502 8.82581 9.20528 9.34258 9.79192 11.29817 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037521 B = 0.006629 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.073800 B = 4222.814911 C = 4609.057545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.233 3.767 10 H 0.035 0.965 11 N -0.812 5.812 12 C -0.082 4.082 13 C -0.134 4.134 14 C 0.023 3.977 15 N -0.600 5.600 16 H 0.409 0.591 17 C 0.095 3.905 18 C -0.141 4.141 19 C -0.103 4.103 20 C -0.158 4.158 21 C -0.057 4.057 22 C -0.101 4.101 23 H 0.254 0.746 24 H 0.295 0.705 25 H 0.311 0.689 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.163 0.837 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -14.654 -1.736 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.123 3.877 10 H 0.053 0.947 11 N -0.338 5.338 12 C -0.122 4.122 13 C -0.141 4.141 14 C -0.101 4.101 15 N -0.203 5.203 16 H 0.245 0.755 17 C -0.013 4.013 18 C -0.161 4.161 19 C -0.122 4.122 20 C -0.178 4.178 21 C -0.075 4.075 22 C -0.106 4.106 23 H 0.064 0.936 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.180 0.820 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.105 -13.914 -1.896 14.043 hybrid contribution 0.776 -0.302 0.573 1.011 sum 0.882 -14.216 -1.323 14.304 Atomic orbital electron populations 1.70110 1.05664 1.25446 1.47067 1.24954 0.94556 0.98396 0.94418 0.86902 0.79774 0.84145 0.78396 1.20471 1.21488 1.20474 1.20954 0.92120 0.90496 1.54124 0.93107 1.18933 0.88661 0.89707 0.90367 0.94684 1.59123 1.28457 1.41937 1.04277 1.21124 0.98885 0.91422 1.00779 1.20794 1.04865 0.98239 0.90207 1.21538 1.01267 0.88620 0.98664 1.41620 1.52126 1.21901 1.04683 0.75473 1.18272 1.01897 0.97460 0.83625 1.19907 1.04887 0.99730 0.91624 1.20710 0.99713 0.97120 0.94644 1.20567 1.02292 0.95808 0.99106 1.20415 0.97456 0.98782 0.90865 1.19192 1.02698 0.95050 0.93630 0.93631 0.89445 0.87759 0.92834 0.92068 0.81970 0.86908 0.86341 0.86405 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.43 12.77 55.43 0.71 -24.72 16 2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 3 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.54 -14.97 8.73 -34.44 -0.30 -15.27 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.23 5.86 2.66 -68.86 -0.18 5.67 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 11 N -0.81 -19.45 8.50 -5.65 -0.05 -19.49 16 12 C -0.08 -1.69 5.33 -27.88 -0.15 -1.84 16 13 C -0.13 -2.48 4.94 -102.71 -0.51 -2.99 16 14 C 0.02 0.35 11.09 -16.73 -0.19 0.17 16 15 N -0.60 -8.19 6.07 -10.65 -0.06 -8.25 16 16 H 0.41 4.06 8.96 -40.82 -0.37 3.70 16 17 C 0.10 1.51 7.28 -83.99 -0.61 0.89 16 18 C -0.14 -1.93 10.08 -39.43 -0.40 -2.32 16 19 C -0.10 -1.36 10.01 -39.54 -0.40 -1.76 16 20 C -0.16 -2.31 9.97 -39.94 -0.40 -2.71 16 21 C -0.06 -0.98 10.05 -39.65 -0.40 -1.38 16 22 C -0.10 -1.84 6.35 -105.14 -0.67 -2.51 16 23 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.29 6.48 7.77 -39.29 -0.31 6.18 16 25 H 0.31 7.04 8.99 -39.30 -0.35 6.69 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 276.57 15.07 4.17 4.17 Total: -1.00 -31.84 276.57 -8.50 -40.34 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.95 Total: 13.14 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -4.29 Total: -21.77 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.60 Total: -52.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.84 -8.50 -40.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075601352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.133 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds