Wall clock time and date at job start Mon Mar 30 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47100 * 239.99864 * 3 2 1 5 5 H 1.48501 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47428 * 119.99509 * 3 2 1 7 7 C 1.37881 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99706 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47543 * 59.99704 * 9 7 2 11 11 N 1.46902 * 109.46971 * 299.99238 * 9 7 2 12 12 C 1.53004 * 109.46926 * 179.97438 * 9 7 2 13 13 C 1.50694 * 109.46881 * 184.99594 * 12 9 7 14 14 C 1.34242 * 126.50507 * 264.68739 * 13 12 9 15 15 N 1.36830 * 109.93296 * 180.26494 * 14 13 12 16 16 H 0.96997 * 125.06625 * 180.02562 * 15 14 13 17 17 C 1.37691 * 109.87320 * 0.02562 * 15 14 13 18 18 C 1.39128 * 133.50831 * 179.97438 * 17 15 14 19 19 C 1.37752 * 119.77814 * 180.02562 * 18 17 15 20 20 C 1.38836 * 120.66720 * 359.97438 * 19 18 17 21 21 C 1.36624 * 120.52467 * 0.02562 * 20 19 18 22 22 C 1.39627 * 119.76669 * 0.02562 * 21 20 19 23 23 H 0.96994 * 119.99980 * 0.02562 * 1 2 3 24 24 H 1.00904 * 110.99958 * 176.04562 * 11 9 7 25 25 H 1.00894 * 111.00416 * 300.00279 * 11 9 7 26 26 H 1.08995 * 109.46850 * 65.00014 * 12 9 7 27 27 H 1.08996 * 109.46850 * 304.99574 * 12 9 7 28 28 H 1.08002 * 125.03001 * 0.22732 * 14 13 12 29 29 H 1.08000 * 120.11191 * 0.04546 * 18 17 15 30 30 H 1.07995 * 119.66456 * 180.02562 * 19 18 17 31 31 H 1.07997 * 119.73077 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.11281 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2454 -3.6621 0.0005 13 6 1.4960 -4.9636 -0.1232 14 6 1.1142 -5.7642 0.8845 15 7 0.4616 -6.8597 0.3883 16 1 0.0926 -7.5788 0.9245 17 6 0.4067 -6.7893 -0.9858 18 6 -0.1282 -7.6182 -1.9667 19 6 -0.0202 -7.2655 -3.2940 20 6 0.6176 -6.0893 -3.6644 21 6 1.1500 -5.2607 -2.7176 22 6 1.0528 -5.5992 -1.3665 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1578 -3.4134 1.1913 25 1 0.9639 -2.5251 2.0390 26 1 2.8115 -3.6560 0.9319 27 1 2.9294 -3.5552 -0.8413 28 1 1.2958 -5.5722 1.9317 29 1 -0.6269 -8.5349 -1.6886 30 1 -0.4364 -7.9101 -4.0539 31 1 0.6941 -5.8278 -4.7095 32 1 1.6443 -4.3471 -3.0132 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075601352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:02 Heat of formation + Delta-G solvation = 30.399201 kcal Electronic energy + Delta-G solvation = -15371.690776 eV Core-core repulsion = 12910.178213 eV Total energy + Delta-G solvation = -2461.512563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.10048 -37.85967 -36.95882 -34.02417 -32.55182 -30.49801 -29.98224 -28.62468 -26.63493 -23.70376 -22.65701 -22.31139 -20.12488 -18.71664 -18.23569 -17.14611 -16.56408 -16.27847 -16.05051 -15.37052 -14.96375 -14.73328 -14.56557 -14.13970 -13.93236 -13.36774 -13.18448 -12.80525 -12.58573 -12.51760 -12.47647 -12.13601 -11.63584 -11.59956 -10.94683 -10.49726 -10.42245 -9.07922 -8.80534 -8.38277 -7.90875 -6.14137 0.26953 0.76192 1.44956 1.46531 1.53633 1.83455 2.33271 2.50555 3.04618 3.31355 3.89553 3.99938 4.23096 4.30158 4.43312 4.50532 4.60205 4.71829 4.87270 4.99922 5.02637 5.04753 5.20286 5.33921 5.60260 5.70244 5.75503 5.84214 5.86787 5.95091 6.27773 6.32298 6.76512 6.82949 7.25240 7.40622 7.59334 9.11511 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037521 B = 0.006629 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.073800 B = 4222.814911 C = 4609.057545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.050 0.950 9 C 0.240 3.760 10 H -0.013 1.013 11 N -0.820 5.820 12 C -0.061 4.061 13 C -0.184 4.184 14 C 0.050 3.950 15 N -0.582 5.582 16 H 0.430 0.570 17 C 0.081 3.919 18 C -0.134 4.134 19 C -0.103 4.103 20 C -0.154 4.154 21 C -0.097 4.097 22 C -0.135 4.135 23 H 0.253 0.747 24 H 0.307 0.693 25 H 0.320 0.680 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.192 0.808 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -16.517 -1.250 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.172 4.172 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.594 4.594 8 H 0.068 0.932 9 C 0.130 3.870 10 H 0.005 0.995 11 N -0.348 5.348 12 C -0.102 4.102 13 C -0.191 4.191 14 C -0.076 4.076 15 N -0.187 5.187 16 H 0.270 0.730 17 C -0.027 4.027 18 C -0.154 4.154 19 C -0.122 4.122 20 C -0.173 4.173 21 C -0.115 4.115 22 C -0.140 4.140 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.132 0.868 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.167 0.833 30 H 0.175 0.825 31 H 0.156 0.844 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.139 -15.816 -1.404 15.878 hybrid contribution 0.824 0.175 0.376 0.923 sum 0.685 -15.640 -1.028 15.689 Atomic orbital electron populations 1.70260 1.07230 1.26147 1.48422 1.25733 0.95379 1.01953 0.94099 0.85818 0.78465 0.79685 0.78705 1.19921 1.21283 1.19528 1.21389 0.92389 0.92068 1.53542 0.93168 1.18613 0.88704 0.90704 0.88959 0.99480 1.58905 1.28801 1.42949 1.04099 1.20670 0.97645 0.91520 1.00341 1.20604 1.07989 0.98591 0.91903 1.21843 0.98743 0.87805 0.99162 1.41566 1.51074 1.21846 1.04223 0.72970 1.18534 1.02212 0.97139 0.84782 1.20384 1.03517 1.00282 0.91224 1.21175 0.98715 0.96707 0.95636 1.20893 1.01031 0.95802 0.99591 1.20486 0.99879 0.99363 0.91818 1.19485 1.04004 0.96621 0.93880 0.93843 0.88137 0.86801 0.91983 0.93851 0.79157 0.83278 0.82520 0.84404 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.27 12.77 21.45 0.27 -54.00 16 2 C 0.03 1.81 5.39 84.66 0.46 2.27 16 3 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.56 -31.72 8.73 25.60 0.22 -31.50 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 9 C 0.24 12.55 2.66 44.17 0.12 12.67 16 10 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 11 N -0.82 -39.85 8.50 -171.80 -1.46 -41.31 16 12 C -0.06 -2.64 5.33 29.85 0.16 -2.48 16 13 C -0.18 -6.89 4.94 -18.63 -0.09 -6.99 16 14 C 0.05 1.46 11.09 83.00 0.92 2.38 16 15 N -0.58 -14.40 6.07 -187.60 -1.14 -15.54 16 16 H 0.43 6.97 8.96 -92.71 -0.83 6.14 16 17 C 0.08 2.43 7.28 39.03 0.28 2.71 16 18 C -0.13 -3.23 10.08 22.37 0.23 -3.01 16 19 C -0.10 -2.44 10.01 22.30 0.22 -2.22 16 20 C -0.15 -4.39 9.97 22.04 0.22 -4.17 16 21 C -0.10 -3.50 10.05 22.23 0.22 -3.28 16 22 C -0.14 -5.03 6.35 -20.20 -0.13 -5.16 16 23 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 24 H 0.31 13.56 7.77 -89.69 -0.70 12.86 16 25 H 0.32 14.46 8.99 -89.70 -0.81 13.65 16 26 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 32 H 0.10 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -70.90 276.57 1.35 -69.55 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -1.18 Total: 33.03 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 2.83 Total: -38.76 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -2.33 Total: -110.86 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.90 1.35 -69.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075601352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.951 kcal (2) G-P(sol) polarization free energy of solvation -70.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds