Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30110 * 124.95267 * 2 1 4 4 C 1.35788 * 109.64331 * 179.97438 * 3 2 1 5 5 C 1.39741 * 133.59926 * 179.97438 * 4 3 2 6 6 C 1.36602 * 119.88534 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.66578 * 180.02562 * 6 5 4 8 8 C 1.50691 * 109.46894 * 270.02182 * 7 6 5 9 9 H 1.07997 * 120.00500 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00096 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00493 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99708 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47324 * 89.99956 * 12 10 8 14 14 H 1.48506 * 109.46914 * 210.00088 * 12 10 8 15 15 H 1.48504 * 109.47003 * 330.00019 * 12 10 8 16 16 C 1.38782 * 120.66932 * 0.02562 * 6 5 4 17 17 C 1.37851 * 120.45144 * 0.23912 * 16 6 5 18 18 C 1.38836 * 119.68643 * 359.48504 * 17 16 6 19 19 N 1.36037 * 124.94973 * 179.97438 * 2 1 3 20 20 C 1.46504 * 126.34837 * 0.02562 * 19 2 1 21 21 H 1.09004 * 109.46585 * 90.02443 * 1 2 3 22 22 H 1.08997 * 109.47246 * 210.02411 * 1 2 3 23 23 H 1.08998 * 109.46834 * 330.03227 * 1 2 3 24 24 H 1.07994 * 120.05882 * 0.03148 * 5 4 3 25 25 H 1.09002 * 109.47127 * 30.02135 * 7 6 5 26 26 H 1.09003 * 109.46746 * 150.02287 * 7 6 5 27 27 H 0.97000 * 119.99794 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.77158 * 179.97438 * 16 6 5 29 29 H 1.08000 * 120.15553 * 179.73822 * 17 16 6 30 30 H 1.09000 * 109.46793 * 90.02367 * 20 19 2 31 31 H 1.08992 * 109.47388 * 210.02138 * 20 19 2 32 32 H 1.08996 * 109.47315 * 330.02646 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7079 0.0006 5 6 4.7588 1.4295 0.0004 6 6 5.9532 0.7668 0.0006 7 6 7.2408 1.5499 0.0010 8 6 7.6699 1.8115 -1.4197 9 1 7.0702 1.4475 -2.2407 10 6 8.8278 2.5166 -1.6713 11 7 9.2021 2.7453 -2.9112 12 14 9.8649 3.1468 -0.2512 13 1 10.8677 2.1180 0.1243 14 1 10.5628 4.3916 -0.6622 15 1 8.9885 3.4321 0.9133 16 6 5.9931 -0.6205 0.0005 17 6 4.8253 -1.3530 -0.0048 18 6 3.6019 -0.6966 0.0008 19 7 2.2863 -1.1150 0.0005 20 6 1.8165 -2.5027 0.0006 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5133 24 1 4.7393 2.5093 0.0001 25 1 7.0887 2.4989 0.5152 26 1 8.0137 0.9781 0.5146 27 1 10.0169 3.2410 -3.0881 28 1 6.9456 -1.1296 0.0002 29 1 4.8619 -2.4323 -0.0091 30 1 1.7008 -2.8471 -1.0271 31 1 2.5426 -3.1321 0.5151 32 1 0.8567 -2.5614 0.5136 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = 42.012731 kcal Electronic energy + Delta-G solvation = -15144.186028 eV Core-core repulsion = 12683.177066 eV Total energy + Delta-G solvation = -2461.008962 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.05843 -38.85723 -35.18864 -35.12536 -33.16462 -31.65945 -30.22349 -28.20928 -27.49114 -24.55497 -23.10437 -21.89597 -20.90881 -18.95835 -18.03173 -17.74758 -16.91248 -16.47154 -15.93217 -15.08332 -14.97335 -14.50865 -14.29779 -14.19705 -13.93730 -13.71589 -13.42540 -13.34257 -13.06983 -12.60292 -12.41309 -12.27641 -11.81097 -11.75158 -11.52659 -11.16555 -10.88208 -10.77115 -9.06302 -8.91501 -8.28507 -6.33800 0.06963 0.62900 1.37752 1.40732 1.52972 1.73914 1.84233 2.37397 2.95021 3.05556 3.27085 3.60611 3.92432 4.13332 4.18685 4.37980 4.45048 4.47456 4.58619 4.68607 4.73980 4.77171 4.90237 5.03875 5.07404 5.16185 5.28278 5.49147 5.54244 5.62490 5.94783 6.01125 6.28975 6.32496 6.71923 6.97313 7.29483 8.88377 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048915 B = 0.005801 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.287952 B = 4825.250640 C = 5016.753998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.275 3.725 3 N -0.548 5.548 4 C 0.021 3.979 5 C -0.099 4.099 6 C -0.063 4.063 7 C 0.025 3.975 8 C -0.521 4.521 9 H 0.024 0.976 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.953 3.047 13 H -0.259 1.259 14 H -0.283 1.283 15 H -0.248 1.248 16 C -0.107 4.107 17 C -0.101 4.101 18 C 0.021 3.979 19 N -0.493 5.493 20 C 0.070 3.930 21 H 0.101 0.899 22 H 0.113 0.887 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.268 0.732 28 H 0.142 0.858 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.741 -12.907 9.489 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 N -0.270 5.270 4 C -0.096 4.096 5 C -0.119 4.119 6 C -0.065 4.065 7 C -0.012 4.012 8 C -0.559 4.559 9 H 0.042 0.958 10 C -0.189 4.189 11 N -0.591 5.591 12 Si 0.776 3.224 13 H -0.183 1.183 14 H -0.209 1.209 15 H -0.172 1.172 16 C -0.126 4.126 17 C -0.122 4.122 18 C -0.087 4.087 19 N -0.184 5.184 20 C -0.070 4.070 21 H 0.120 0.880 22 H 0.132 0.868 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.174 0.826 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.950 -12.163 9.385 22.876 hybrid contribution 1.184 0.051 -0.189 1.200 sum -15.766 -12.112 9.196 21.906 Atomic orbital electron populations 1.20585 0.80538 1.06146 1.05481 1.24593 0.97524 0.80244 0.96652 1.70305 1.01194 1.29881 1.25596 1.19183 0.91936 0.92029 1.06436 1.19813 0.89693 0.99084 1.03323 1.19641 0.94628 0.94831 0.97418 1.18624 0.91579 0.95366 0.95611 1.21165 1.07864 1.35111 0.91714 0.95759 1.26003 0.98723 0.95564 0.98643 1.70067 1.25228 1.42339 1.21500 0.85616 0.78943 0.78309 0.79569 1.18312 1.20909 1.17185 1.21042 0.98608 0.92738 1.00259 1.20136 0.87850 1.00439 1.03741 1.18981 0.86897 0.94415 1.08423 1.45340 1.03215 1.09095 1.60772 1.22351 1.03109 0.76709 1.04789 0.88024 0.86815 0.88614 0.87675 0.95576 0.94128 0.92340 0.84048 0.82605 0.89689 0.88819 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.17 71.24 0.72 -0.25 16 2 C 0.28 7.57 7.85 137.92 1.08 8.65 16 3 N -0.55 -21.13 11.27 -179.96 -2.03 -23.15 16 4 C 0.02 0.90 7.23 39.45 0.29 1.19 16 5 C -0.10 -4.60 9.67 22.25 0.22 -4.38 16 6 C -0.06 -2.88 5.03 -20.12 -0.10 -2.98 16 7 C 0.03 1.28 4.15 29.10 0.12 1.40 16 8 C -0.52 -31.51 9.65 25.60 0.25 -31.26 16 9 H 0.02 1.65 7.98 -2.91 -0.02 1.62 16 10 C 0.01 0.45 5.47 84.66 0.46 0.91 16 11 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 12 Si 0.95 44.99 27.47 68.60 1.88 46.88 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 16 C -0.11 -4.11 9.67 22.31 0.22 -3.89 16 17 C -0.10 -3.26 10.05 22.32 0.22 -3.04 16 18 C 0.02 0.74 6.87 38.86 0.27 1.01 16 19 N -0.49 -12.65 3.21 -528.84 -1.70 -14.34 16 20 C 0.07 0.86 10.96 127.77 1.40 2.26 16 21 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.11 0.71 7.01 -2.39 -0.02 0.70 16 23 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 25 H 0.03 1.30 7.13 -2.39 -0.02 1.28 16 26 H 0.04 1.88 7.51 -2.39 -0.02 1.86 16 27 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 28 H 0.14 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.12 0.63 6.99 -2.39 -0.02 0.61 16 Total: -1.00 -81.12 275.12 4.66 -76.47 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.05 Total: 5.46 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 5.15 Total: -30.39 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -3.43 Total: -98.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -81.12 4.66 -76.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.478 kcal (2) G-P(sol) polarization free energy of solvation -81.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds