Wall clock time and date at job start Mon Mar 30 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46878 * 274.10406 * 3 2 1 5 5 H 1.48499 * 109.47438 * 34.10205 * 3 2 1 6 6 H 1.48500 * 109.47210 * 154.10498 * 3 2 1 7 7 C 1.38854 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00657 * 340.84817 * 7 2 1 9 9 N 1.37207 * 119.99639 * 160.83962 * 7 2 1 10 10 C 1.36998 * 125.09293 * 338.44127 * 9 7 2 11 11 C 1.34310 * 109.93205 * 179.97438 * 10 9 7 12 12 C 1.50699 * 126.47537 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47030 * 265.02717 * 12 11 10 14 14 N 1.46893 * 109.47259 * 180.02562 * 13 12 11 15 15 C 1.46661 * 107.04853 * 0.24635 * 11 10 9 16 16 C 1.39525 * 133.96797 * 180.49180 * 15 11 10 17 17 C 1.37773 * 119.65393 * 179.58086 * 16 15 11 18 18 C 1.38755 * 120.36891 * 359.71257 * 17 16 15 19 19 C 1.37896 * 120.64222 * 0.02562 * 18 17 16 20 20 C 1.38111 * 125.09017 * 158.43753 * 9 7 2 21 21 H 0.96996 * 119.99258 * 0.02562 * 1 2 3 22 22 H 1.07996 * 125.03875 * 359.97438 * 10 9 7 23 23 H 1.08994 * 109.47169 * 145.02958 * 12 11 10 24 24 H 1.09000 * 109.47131 * 25.02314 * 12 11 10 25 25 H 1.09001 * 109.47285 * 59.99539 * 13 12 11 26 26 H 1.09009 * 109.47146 * 300.00298 * 13 12 11 27 27 H 1.00901 * 111.00191 * 179.97438 * 14 13 12 28 28 H 1.00901 * 111.00375 * 303.95417 * 14 13 12 29 29 H 1.08002 * 120.16961 * 359.29699 * 16 15 11 30 30 H 1.08006 * 119.81465 * 179.74324 * 17 16 15 31 31 H 1.07998 * 119.67790 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.03543 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4092 2.0964 -1.3965 5 1 1.4921 2.6261 0.7850 6 1 3.5867 1.4166 0.6114 7 6 2.0086 -1.2026 0.0005 8 1 1.5135 -2.1118 0.3078 9 7 3.3237 -1.2357 -0.3895 10 6 3.9365 -0.2944 -1.1739 11 6 5.2236 -0.6263 -1.3663 12 6 6.2375 0.1463 -2.1702 13 6 6.3007 -0.4195 -3.5903 14 7 7.2894 0.3331 -4.3737 15 6 5.4543 -1.8860 -0.6516 16 6 6.5670 -2.7087 -0.4729 17 6 6.4534 -3.8540 0.2843 18 6 5.2422 -4.1885 0.8731 19 6 4.1352 -3.3826 0.7100 20 6 4.2279 -2.2229 -0.0499 21 1 -0.4849 0.8401 -0.0004 22 1 3.4559 0.5843 -1.5778 23 1 7.2170 0.0585 -1.7002 24 1 5.9463 1.1959 -2.2099 25 1 5.3211 -0.3319 -4.0603 26 1 6.5919 -1.4693 -3.5506 27 1 7.3501 -0.0221 -5.3162 28 1 7.0774 1.3196 -4.3717 29 1 7.5112 -2.4513 -0.9297 30 1 7.3120 -4.4949 0.4209 31 1 5.1659 -5.0887 1.4647 32 1 3.1972 -3.6525 1.1723 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082638460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:37 Heat of formation + Delta-G solvation = 51.558266 kcal Electronic energy + Delta-G solvation = -15567.982750 eV Core-core repulsion = 13107.387713 eV Total energy + Delta-G solvation = -2460.595037 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41787 -36.27760 -35.38761 -33.25330 -31.68307 -29.26659 -28.82185 -27.14508 -24.43202 -22.04839 -21.70465 -20.56534 -19.17666 -17.59037 -16.05541 -15.71473 -15.38540 -15.01571 -14.37594 -14.05431 -13.76002 -13.47686 -13.23627 -12.74268 -12.61554 -12.01384 -11.64520 -11.54423 -11.33093 -11.00341 -10.99958 -10.51147 -10.40901 -10.10334 -9.85681 -9.25681 -8.68316 -8.53442 -7.32285 -6.91343 -6.88925 -4.34847 1.97562 2.49278 2.88524 3.05351 3.14364 3.55311 3.82431 4.29071 4.59438 4.83106 4.93540 5.42391 5.60126 5.70274 5.75793 5.77065 5.92365 6.04733 6.11140 6.26326 6.37383 6.53429 6.59846 6.75893 6.79332 6.98196 7.21988 7.27795 7.34403 7.44421 7.53793 7.60439 7.83208 7.91643 8.18780 8.80152 9.10584 10.17473 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.012109 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.169808 B = 2311.713403 C = 3590.926003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.343 4.343 8 H 0.121 0.879 9 N -0.291 5.291 10 C 0.007 3.993 11 C -0.218 4.218 12 C -0.026 4.026 13 C 0.065 3.935 14 N -0.855 5.855 15 C -0.110 4.110 16 C -0.079 4.079 17 C -0.167 4.167 18 C -0.134 4.134 19 C -0.102 4.102 20 C 0.061 3.939 21 H 0.285 0.715 22 H 0.146 0.854 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.336 0.664 28 H 0.336 0.664 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -0.048 -3.556 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.470 4.470 8 H 0.138 0.862 9 N 0.047 4.953 10 C -0.126 4.126 11 C -0.226 4.226 12 C -0.064 4.064 13 C -0.065 4.065 14 N -0.384 5.384 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.187 4.187 18 C -0.154 4.154 19 C -0.122 4.122 20 C -0.051 4.051 21 H 0.096 0.904 22 H 0.163 0.837 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.692 -0.192 -2.896 9.163 hybrid contribution -0.877 1.121 -0.552 1.526 sum 7.814 0.928 -3.448 8.592 Atomic orbital electron populations 1.69726 1.06316 1.29421 1.41171 1.25294 0.95477 0.99349 0.94230 0.86693 0.81235 0.81781 0.78881 1.19623 1.21000 1.17094 1.19449 0.82739 0.98132 1.46724 0.86195 1.40321 1.07620 1.15364 1.32021 1.21320 0.93636 0.96994 1.00640 1.19574 0.94269 0.98578 1.10182 1.19606 0.97345 0.96879 0.92615 1.21873 0.92431 0.98351 0.93890 1.58794 1.53725 1.07557 1.18276 1.18789 0.93102 0.96485 1.03138 1.20267 0.96379 0.94256 0.98887 1.20557 0.97255 0.98367 1.02489 1.20502 0.92889 0.99481 1.02512 1.19959 0.98655 0.93450 1.00175 1.18233 0.89089 0.94507 1.03222 0.90446 0.83700 0.91377 0.92814 0.95665 0.90965 0.85259 0.85257 0.87492 0.87574 0.87267 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.50 13.96 55.49 0.77 -21.72 16 2 C 0.07 1.78 5.44 -17.49 -0.10 1.68 16 3 Si 0.89 20.14 24.67 -169.99 -4.19 15.95 16 4 H -0.27 -5.79 6.67 56.52 0.38 -5.41 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.25 -5.78 6.71 56.52 0.38 -5.40 16 7 C -0.34 -9.24 10.35 -14.92 -0.15 -9.39 16 8 H 0.12 3.35 8.06 -52.49 -0.42 2.93 16 9 N -0.29 -7.37 2.76 -59.73 -0.16 -7.54 16 10 C 0.01 0.17 8.24 -16.63 -0.14 0.04 16 11 C -0.22 -4.64 5.58 -102.61 -0.57 -5.22 16 12 C -0.03 -0.45 6.01 -27.88 -0.17 -0.62 16 13 C 0.06 0.99 6.77 -3.83 -0.03 0.97 16 14 N -0.85 -10.71 9.62 -10.37 -0.10 -10.81 16 15 C -0.11 -2.42 6.35 -105.09 -0.67 -3.08 16 16 C -0.08 -1.51 10.10 -39.27 -0.40 -1.91 16 17 C -0.17 -2.96 10.03 -39.56 -0.40 -3.36 16 18 C -0.13 -2.45 10.02 -39.52 -0.40 -2.85 16 19 C -0.10 -2.18 9.95 -39.44 -0.39 -2.57 16 20 C 0.06 1.45 6.75 -83.84 -0.57 0.88 16 21 H 0.29 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.15 3.28 4.39 -52.49 -0.23 3.05 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 27 H 0.34 3.52 9.08 -39.29 -0.36 3.16 16 28 H 0.34 3.75 8.99 -39.29 -0.35 3.39 16 29 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.11 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -27.97 270.70 -7.50 -35.47 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.93 Total: 10.01 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -3.97 Total: -25.43 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.51 Total: -40.07 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.19 Total: 15.95 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.97 -7.50 -35.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082638460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.024 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds