Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46665 * 2 1 4 4 C 1.52998 * 109.47104 * 240.00166 * 2 1 3 5 5 C 1.53002 * 109.47104 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47018 * 59.99443 * 5 4 2 7 7 C 1.52998 * 109.47637 * 300.00230 * 6 5 4 8 8 H 1.09002 * 109.47224 * 300.00331 * 7 6 5 9 9 S 1.81398 * 109.47311 * 180.02562 * 7 6 5 10 10 O 1.42102 * 109.47085 * 298.60775 * 9 7 6 11 11 C 1.81399 * 103.00088 * 54.99903 * 9 7 6 12 12 C 1.50699 * 109.47054 * 179.97438 * 11 9 7 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00270 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00302 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47310 * 89.99428 * 16 14 12 18 18 H 1.48491 * 109.47296 * 209.99911 * 16 14 12 19 19 H 1.48502 * 109.46905 * 329.99956 * 16 14 12 20 20 C 1.52998 * 109.47018 * 119.99609 * 2 1 3 21 21 H 1.09002 * 109.47157 * 300.00078 * 1 2 3 22 22 H 1.09000 * 109.46943 * 60.00045 * 1 2 3 23 23 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46920 * 299.99911 * 4 2 1 25 25 H 1.09000 * 109.47393 * 60.00064 * 4 2 1 26 26 H 1.08994 * 109.47345 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.46665 * 299.99834 * 5 4 2 28 28 H 1.09001 * 109.47458 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47083 * 60.00647 * 6 5 4 30 30 H 1.09000 * 109.47070 * 300.00061 * 11 9 7 31 31 H 1.09001 * 109.46593 * 60.00058 * 11 9 7 32 32 H 0.97002 * 119.99998 * 179.97438 * 15 14 12 33 33 H 1.09005 * 109.46893 * 60.00158 * 20 2 1 34 34 H 1.08994 * 109.47552 * 300.00473 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4414 -0.0003 7 6 3.5705 -0.7202 1.2490 8 1 3.9334 0.3076 1.2487 9 16 4.1765 -1.5744 2.7301 10 8 3.6774 -2.9048 2.7471 11 6 5.9725 -1.6055 2.4772 12 6 6.6321 -2.2946 3.6438 13 1 6.0311 -2.6754 4.4563 14 6 8.0030 -2.4390 3.6740 15 7 8.5787 -3.0399 4.6923 16 14 9.0427 -1.7798 2.2689 17 1 9.4330 -0.3764 2.5580 18 1 10.2631 -2.6129 2.1230 19 1 8.2583 -1.8258 1.0088 20 6 2.0400 -0.7212 1.2493 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.9334 -1.2340 -2.1397 27 1 3.9329 0.3072 -1.2498 28 1 5.1705 -1.4407 -0.0002 29 1 3.7176 -2.4693 -0.0001 30 1 6.2008 -2.1464 1.5588 31 1 6.3462 -0.5845 2.4001 32 1 9.5431 -3.1418 4.7133 33 1 1.6766 -1.7489 1.2493 34 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -72.916929 kcal Electronic energy + Delta-G solvation = -14522.677603 eV Core-core repulsion = 12159.836117 eV Total energy + Delta-G solvation = -2362.841486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.49731 -34.68470 -33.05514 -32.55613 -30.66811 -29.38583 -26.36468 -23.10380 -22.08195 -21.30934 -19.65705 -17.04352 -16.64965 -15.33949 -14.79415 -14.48414 -14.33047 -14.22176 -13.73032 -13.31919 -12.93882 -12.57393 -12.39888 -12.34567 -11.74615 -11.54940 -11.51301 -11.14329 -10.91961 -10.82298 -10.71101 -10.41612 -10.34940 -10.10023 -10.00117 -9.55309 -8.79745 -8.67814 -7.25452 -6.16396 -4.19395 2.44087 3.21645 3.30404 3.32686 3.67351 4.34634 4.61532 4.74534 4.79622 4.91933 5.15489 5.22404 5.27307 5.45149 5.52752 5.58671 5.66099 5.73092 5.78169 5.84327 5.98785 6.03864 6.20581 6.25350 6.29564 6.34018 6.37621 6.56972 6.64644 6.69094 7.52072 8.24418 8.82506 9.42435 10.95475 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042933 B = 0.007235 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.029618 B = 3869.373174 C = 4317.010298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.423 4.423 8 H 0.113 0.887 9 S 1.227 4.773 10 O -0.856 6.856 11 C -0.302 4.302 12 C -0.512 4.512 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.893 5.893 16 Si 0.881 3.119 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.268 1.268 20 C -0.087 4.087 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.267 0.733 33 H 0.064 0.936 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 10.187 -9.146 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.538 4.538 8 H 0.131 0.869 9 S 1.428 4.572 10 O -0.852 6.852 11 C -0.442 4.442 12 C -0.551 4.551 13 H 0.098 0.902 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.708 3.292 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.125 4.125 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.254 9.749 -8.312 17.728 hybrid contribution 1.437 -0.798 -2.641 3.111 sum -10.817 8.951 -10.953 17.807 Atomic orbital electron populations 1.21846 0.95569 1.01720 1.01377 1.21109 0.94871 0.99576 0.95122 0.91176 1.21575 0.95697 1.00518 0.97235 1.21502 0.95550 1.00570 0.97633 1.21590 1.00524 0.99208 0.93892 1.27813 1.02147 1.09769 1.14035 0.86886 1.69826 0.88746 0.99244 0.99425 1.93026 1.75290 1.37107 1.79776 1.25391 1.13140 1.02507 1.03184 1.20287 0.92546 1.38234 1.04031 0.90195 1.24953 0.97668 0.94239 0.95614 1.69887 1.10712 1.42180 1.30227 0.86741 0.79880 0.79305 0.83251 1.19751 1.21174 1.19276 1.21216 0.92518 1.01097 0.97666 0.92580 0.93023 0.92826 0.92285 0.92514 0.92584 0.92043 0.91512 0.91914 0.94003 0.91641 0.92334 0.91721 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.09 -0.98 2.72 -90.62 -0.25 -1.22 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 5 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 6 C -0.11 -1.82 4.95 -26.73 -0.13 -1.96 16 7 C -0.42 -6.22 2.71 -26.70 -0.07 -6.30 16 8 H 0.11 1.38 8.14 -51.92 -0.42 0.96 16 9 S 1.23 22.95 12.59 -107.50 -1.35 21.60 16 10 O -0.86 -21.25 18.13 -35.23 -0.64 -21.89 16 11 C -0.30 -6.89 4.15 36.01 0.15 -6.74 16 12 C -0.51 -14.45 9.68 -34.44 -0.33 -14.79 16 13 H 0.08 2.43 7.96 -52.48 -0.42 2.02 16 14 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 15 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 16 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 20 C -0.09 -1.14 4.49 -26.70 -0.12 -1.26 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 1.00 5.95 -51.92 -0.31 0.69 16 31 H 0.07 1.32 7.57 -51.92 -0.39 0.93 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -34.42 281.39 -8.15 -42.57 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.70 Total: -2.54 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: -0.81 Total: -34.24 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.64 Total: -21.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -1.35 Total: 21.60 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.42 -8.15 -42.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.346 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds