Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46665 * 2 1 4 4 C 1.52998 * 109.47104 * 240.00166 * 2 1 3 5 5 C 1.53002 * 109.47104 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47018 * 59.99443 * 5 4 2 7 7 C 1.52998 * 109.47637 * 300.00230 * 6 5 4 8 8 H 1.09002 * 109.47224 * 300.00331 * 7 6 5 9 9 S 1.81398 * 109.47311 * 180.02562 * 7 6 5 10 10 O 1.42102 * 109.47085 * 298.60775 * 9 7 6 11 11 C 1.81399 * 103.00088 * 54.99903 * 9 7 6 12 12 C 1.50699 * 109.47054 * 179.97438 * 11 9 7 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00270 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00302 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47310 * 89.99428 * 16 14 12 18 18 H 1.48491 * 109.47296 * 209.99911 * 16 14 12 19 19 H 1.48502 * 109.46905 * 329.99956 * 16 14 12 20 20 C 1.52998 * 109.47018 * 119.99609 * 2 1 3 21 21 H 1.09002 * 109.47157 * 300.00078 * 1 2 3 22 22 H 1.09000 * 109.46943 * 60.00045 * 1 2 3 23 23 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46920 * 299.99911 * 4 2 1 25 25 H 1.09000 * 109.47393 * 60.00064 * 4 2 1 26 26 H 1.08994 * 109.47345 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.46665 * 299.99834 * 5 4 2 28 28 H 1.09001 * 109.47458 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47083 * 60.00647 * 6 5 4 30 30 H 1.09000 * 109.47070 * 300.00061 * 11 9 7 31 31 H 1.09001 * 109.46593 * 60.00058 * 11 9 7 32 32 H 0.97002 * 119.99998 * 179.97438 * 15 14 12 33 33 H 1.09005 * 109.46893 * 60.00158 * 20 2 1 34 34 H 1.08994 * 109.47552 * 300.00473 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4414 -0.0003 7 6 3.5705 -0.7202 1.2490 8 1 3.9334 0.3076 1.2487 9 16 4.1765 -1.5744 2.7301 10 8 3.6774 -2.9048 2.7471 11 6 5.9725 -1.6055 2.4772 12 6 6.6321 -2.2946 3.6438 13 1 6.0311 -2.6754 4.4563 14 6 8.0030 -2.4390 3.6740 15 7 8.5787 -3.0399 4.6923 16 14 9.0427 -1.7798 2.2689 17 1 9.4330 -0.3764 2.5580 18 1 10.2631 -2.6129 2.1230 19 1 8.2583 -1.8258 1.0088 20 6 2.0400 -0.7212 1.2493 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.9334 -1.2340 -2.1397 27 1 3.9329 0.3072 -1.2498 28 1 5.1705 -1.4407 -0.0002 29 1 3.7176 -2.4693 -0.0001 30 1 6.2008 -2.1464 1.5588 31 1 6.3462 -0.5845 2.4001 32 1 9.5431 -3.1418 4.7133 33 1 1.6766 -1.7489 1.2493 34 1 1.6766 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -96.896004 kcal Electronic energy + Delta-G solvation = -14523.717414 eV Core-core repulsion = 12159.836117 eV Total energy + Delta-G solvation = -2363.881297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52797 -36.49808 -35.16649 -33.60412 -31.73746 -31.38989 -27.32905 -24.83834 -23.48839 -22.35412 -20.67254 -19.14660 -18.24264 -16.60994 -16.56614 -15.84591 -15.50509 -15.39978 -15.27965 -14.80470 -14.45165 -14.21595 -13.68911 -13.31692 -13.30012 -13.00340 -12.74115 -12.53263 -12.38579 -12.04322 -11.98708 -11.88636 -11.70999 -11.67282 -11.36954 -11.01087 -10.84089 -10.38940 -8.87172 -8.35608 -6.44857 0.90249 1.31645 1.35780 1.45805 2.11185 2.31595 2.95303 3.15799 3.70254 3.71944 3.97408 4.16254 4.23355 4.41752 4.51071 4.57230 4.62868 4.74023 4.82240 4.83555 4.88880 5.00408 5.04192 5.10839 5.16601 5.20203 5.30368 5.36638 5.44932 5.48731 5.60741 6.01108 6.61618 7.20730 8.80018 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042933 B = 0.007235 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.029618 B = 3869.373174 C = 4317.010298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 H 0.093 0.907 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.121 4.121 7 C -0.404 4.404 8 H 0.158 0.842 9 S 1.265 4.735 10 O -0.926 6.926 11 C -0.312 4.312 12 C -0.527 4.527 13 H 0.036 0.964 14 C 0.014 3.986 15 N -0.944 5.944 16 Si 0.952 3.048 17 H -0.244 1.244 18 H -0.288 1.288 19 H -0.256 1.256 20 C -0.092 4.092 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.270 0.730 33 H 0.034 0.966 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 13.582 -11.520 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.159 4.159 7 C -0.522 4.522 8 H 0.176 0.824 9 S 1.470 4.530 10 O -0.922 6.922 11 C -0.450 4.450 12 C -0.565 4.565 13 H 0.054 0.946 14 C -0.185 4.185 15 N -0.584 5.584 16 Si 0.774 3.226 17 H -0.167 1.167 18 H -0.214 1.214 19 H -0.180 1.180 20 C -0.130 4.130 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.845 13.129 -10.649 21.231 hybrid contribution 1.496 -1.860 -1.915 3.060 sum -11.349 11.269 -12.564 20.339 Atomic orbital electron populations 1.21836 0.94379 1.01430 1.02758 1.21116 0.95870 1.00070 0.93140 0.88889 1.21616 0.94843 1.00012 0.98730 1.21499 0.96335 1.01231 0.95750 1.21630 0.99874 0.98067 0.96357 1.27653 1.03443 1.10692 1.10438 0.82441 1.68905 0.85414 0.96961 1.01765 1.92918 1.75917 1.40346 1.83026 1.25447 1.16178 1.03420 0.99991 1.20609 0.92833 1.38326 1.04769 0.94559 1.26019 0.99280 0.94563 0.98631 1.70048 1.11293 1.44200 1.32825 0.85627 0.77524 0.79840 0.79582 1.16727 1.21410 1.17979 1.21335 0.90957 1.00270 1.00477 0.91467 0.91432 0.94021 0.94115 0.90165 0.92315 0.89785 0.92592 0.95357 0.95202 0.88006 0.92093 0.94726 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.19 71.98 0.66 -1.65 16 2 C -0.08 -1.51 2.72 -10.79 -0.03 -1.54 16 3 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -2.32 5.20 30.59 0.16 -2.16 16 5 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 6 C -0.12 -3.68 4.95 30.59 0.15 -3.53 16 7 C -0.40 -10.80 2.71 30.61 0.08 -10.71 16 8 H 0.16 2.96 8.14 -2.39 -0.02 2.94 16 9 S 1.27 47.23 12.59 -56.49 -0.71 46.52 16 10 O -0.93 -47.93 18.13 -148.98 -2.70 -50.64 16 11 C -0.31 -14.04 4.15 71.24 0.30 -13.74 16 12 C -0.53 -30.62 9.68 25.60 0.25 -30.37 16 13 H 0.04 2.35 7.96 -2.91 -0.02 2.32 16 14 C 0.01 0.83 5.47 84.65 0.46 1.29 16 15 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 16 Si 0.95 43.51 27.47 68.60 1.88 45.39 16 17 H -0.24 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.26 -11.08 6.54 99.48 0.65 -10.43 16 20 C -0.09 -2.19 4.49 30.61 0.14 -2.05 16 21 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.80 6.51 -2.39 -0.02 1.79 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.03 1.41 5.95 -2.39 -0.01 1.39 16 31 H 0.10 3.82 7.57 -2.39 -0.02 3.80 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 33 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -79.07 281.39 2.11 -76.95 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.99 Total: 7.66 kcal Atomic # 6 Polarization: -69.09 SS G_CDS: 2.35 Total: -66.74 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -2.70 Total: -50.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: 47.23 SS G_CDS: -0.71 Total: 46.52 kcal Total: -79.07 2.11 -76.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.944 kcal (2) G-P(sol) polarization free energy of solvation -79.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds