Wall clock time and date at job start Mon Mar 30 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47240 * 2 1 4 4 C 1.53001 * 109.46592 * 239.99982 * 2 1 3 5 5 C 1.52998 * 109.47144 * 300.00038 * 4 2 1 6 6 C 1.53003 * 109.47406 * 300.00078 * 5 4 2 7 7 C 1.53002 * 109.46776 * 60.00343 * 6 5 4 8 8 H 1.08998 * 109.47389 * 60.00149 * 7 6 5 9 9 S 1.81398 * 109.46783 * 180.02562 * 7 6 5 10 10 O 1.42104 * 109.46811 * 188.61203 * 9 7 6 11 11 C 1.81402 * 103.00044 * 304.99531 * 9 7 6 12 12 C 1.50700 * 109.47099 * 180.02562 * 11 9 7 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00083 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46986 * 270.00126 * 16 14 12 18 18 H 1.48496 * 109.47029 * 30.00143 * 16 14 12 19 19 H 1.48499 * 109.47352 * 149.99973 * 16 14 12 20 20 C 1.53003 * 109.46810 * 120.00234 * 2 1 3 21 21 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46597 * 300.00076 * 1 2 3 23 23 H 1.08999 * 109.47282 * 59.99883 * 1 2 3 24 24 H 1.09003 * 109.46444 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.47624 * 60.00408 * 4 2 1 26 26 H 1.09011 * 109.46994 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47248 * 60.00228 * 5 4 2 28 28 H 1.08998 * 109.47039 * 300.00278 * 6 5 4 29 29 H 1.09004 * 109.47224 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47025 * 60.00594 * 11 9 7 31 31 H 1.08998 * 109.47443 * 300.00362 * 11 9 7 32 32 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 33 33 H 1.08997 * 109.47068 * 299.99629 * 20 2 1 34 34 H 1.08998 * 109.46698 * 179.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4399 -2.1638 1.2493 9 16 2.1352 -3.0186 2.7303 10 8 1.5048 -2.4747 3.8819 11 6 1.5673 -4.7230 2.4785 12 6 1.9988 -5.5737 3.6452 13 1 2.5583 -5.1330 4.4571 14 6 1.6793 -6.9145 3.6760 15 7 0.9985 -7.4513 2.6871 16 14 2.2135 -7.9690 5.1225 17 1 3.5521 -8.5488 4.8447 18 1 2.2811 -7.1318 6.3471 19 1 1.2320 -9.0647 5.3256 20 6 2.0400 -0.7213 1.2493 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.1300 -0.7217 -1.2490 25 1 1.6766 -0.2075 -2.1393 26 1 1.8935 -2.6777 -2.1391 27 1 0.4399 -2.1637 -1.2492 28 1 3.1298 -2.8851 -0.0001 29 1 1.6768 -3.9129 -0.0003 30 1 2.0010 -5.1184 1.5601 31 1 0.4801 -4.7362 2.4021 32 1 0.7208 -6.9036 1.9361 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:05 Heat of formation + Delta-G solvation = -77.000323 kcal Electronic energy + Delta-G solvation = -14603.858975 eV Core-core repulsion = 12240.840419 eV Total energy + Delta-G solvation = -2363.018555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.79435 -34.70045 -33.47288 -31.87344 -30.67437 -28.15177 -26.67819 -23.31511 -22.33031 -22.00186 -18.57710 -17.27483 -16.49177 -15.78307 -14.84328 -14.42702 -14.04270 -13.78846 -13.68555 -13.34031 -13.16540 -12.69403 -12.30816 -12.18475 -11.68150 -11.45764 -11.41187 -11.06952 -10.94689 -10.91033 -10.69374 -10.44800 -10.15064 -10.02727 -9.88117 -9.04010 -8.66143 -8.48206 -7.24582 -6.51210 -4.23509 2.43564 3.39356 3.45095 3.60292 3.71635 4.45559 4.64076 4.74083 4.86972 4.94156 5.26797 5.30102 5.36078 5.41384 5.47024 5.62547 5.72623 5.78059 5.87496 5.90072 6.01575 6.08636 6.21028 6.26038 6.28762 6.40846 6.44808 6.59728 6.77890 6.84193 7.81937 8.26616 8.68195 9.50678 10.90524 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047294 B = 0.006739 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.895644 B = 4153.646281 C = 4472.507581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.420 4.420 8 H 0.082 0.918 9 S 1.209 4.791 10 O -0.868 6.868 11 C -0.270 4.270 12 C -0.592 4.592 13 H 0.058 0.942 14 C 0.025 3.975 15 N -0.904 5.904 16 Si 1.074 2.926 17 H -0.283 1.283 18 H -0.286 1.286 19 H -0.283 1.283 20 C -0.085 4.085 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.270 0.730 33 H 0.061 0.939 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 11.515 -8.842 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.131 4.131 7 C -0.535 4.535 8 H 0.101 0.899 9 S 1.411 4.589 10 O -0.863 6.863 11 C -0.411 4.411 12 C -0.631 4.631 13 H 0.076 0.924 14 C -0.181 4.181 15 N -0.539 5.539 16 Si 0.901 3.099 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.208 1.208 20 C -0.123 4.123 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.375 10.410 -7.449 13.884 hybrid contribution -2.465 1.401 -0.876 2.968 sum 2.910 11.811 -8.326 14.741 Atomic orbital electron populations 1.21942 0.95798 1.02184 1.00936 1.21058 0.95733 0.98586 0.95229 0.91535 1.21541 1.00530 0.95853 0.96965 1.21563 1.00842 0.95469 0.97774 1.21220 1.01083 0.98710 0.92042 1.27642 1.07120 1.04242 1.14500 0.89949 1.69662 1.19169 0.87696 0.82362 1.93003 1.78805 1.75368 1.39133 1.25021 1.02404 1.09976 1.03649 1.21378 1.40486 0.95983 1.05248 0.92415 1.25933 0.94137 0.96105 1.01905 1.70763 1.34478 1.39651 1.08991 0.83479 0.76545 0.75466 0.74434 1.20893 1.21179 1.20840 1.21162 1.00559 0.92960 0.97621 0.92026 0.93115 0.93189 0.91816 0.92596 0.92138 0.92164 0.90738 0.91127 0.91731 0.95411 0.91999 0.92042 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.50 37.16 0.32 -1.54 16 2 C -0.09 -1.01 3.20 -90.62 -0.29 -1.30 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.18 5.45 -26.73 -0.15 -1.32 16 5 C -0.12 -1.40 5.65 -26.73 -0.15 -1.55 16 6 C -0.09 -1.26 4.95 -26.73 -0.13 -1.39 16 7 C -0.42 -6.67 2.44 -26.73 -0.07 -6.74 16 8 H 0.08 1.45 6.43 -51.93 -0.33 1.12 16 9 S 1.21 24.10 12.58 -107.50 -1.35 22.75 16 10 O -0.87 -22.68 18.14 -35.23 -0.64 -23.32 16 11 C -0.27 -6.67 4.39 36.01 0.16 -6.51 16 12 C -0.59 -16.83 9.13 -34.44 -0.31 -17.14 16 13 H 0.06 1.63 7.71 -52.49 -0.40 1.23 16 14 C 0.03 0.73 5.46 -17.82 -0.10 0.63 16 15 N -0.90 -27.30 13.65 55.43 0.76 -26.54 16 16 Si 1.07 25.25 29.90 -169.99 -5.08 20.16 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.08 -1.15 4.74 -26.73 -0.13 -1.28 16 21 H 0.06 0.83 4.81 -51.93 -0.25 0.58 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 30 H 0.06 1.49 6.76 -51.93 -0.35 1.14 16 31 H 0.03 0.75 8.01 -51.93 -0.42 0.33 16 32 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -35.01 276.66 -8.32 -43.33 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.32 Total: -2.41 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: -0.85 Total: -38.14 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.76 Total: -26.54 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.64 Total: -23.32 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Atomic # 16 Polarization: 24.10 SS G_CDS: -1.35 Total: 22.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.01 -8.32 -43.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.672 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds