Wall clock time and date at job start Mon Mar 30 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47240 * 2 1 4 4 C 1.53001 * 109.46592 * 239.99982 * 2 1 3 5 5 C 1.52998 * 109.47144 * 300.00038 * 4 2 1 6 6 C 1.53003 * 109.47406 * 300.00078 * 5 4 2 7 7 C 1.53002 * 109.46776 * 60.00343 * 6 5 4 8 8 H 1.08998 * 109.47389 * 60.00149 * 7 6 5 9 9 S 1.81398 * 109.46783 * 180.02562 * 7 6 5 10 10 O 1.42104 * 109.46811 * 188.61203 * 9 7 6 11 11 C 1.81402 * 103.00044 * 304.99531 * 9 7 6 12 12 C 1.50700 * 109.47099 * 180.02562 * 11 9 7 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00083 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46986 * 270.00126 * 16 14 12 18 18 H 1.48496 * 109.47029 * 30.00143 * 16 14 12 19 19 H 1.48499 * 109.47352 * 149.99973 * 16 14 12 20 20 C 1.53003 * 109.46810 * 120.00234 * 2 1 3 21 21 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46597 * 300.00076 * 1 2 3 23 23 H 1.08999 * 109.47282 * 59.99883 * 1 2 3 24 24 H 1.09003 * 109.46444 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.47624 * 60.00408 * 4 2 1 26 26 H 1.09011 * 109.46994 * 180.02562 * 5 4 2 27 27 H 1.08998 * 109.47248 * 60.00228 * 5 4 2 28 28 H 1.08998 * 109.47039 * 300.00278 * 6 5 4 29 29 H 1.09004 * 109.47224 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47025 * 60.00594 * 11 9 7 31 31 H 1.08998 * 109.47443 * 300.00362 * 11 9 7 32 32 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 33 33 H 1.08997 * 109.47068 * 299.99629 * 20 2 1 34 34 H 1.08998 * 109.46698 * 179.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4399 -2.1638 1.2493 9 16 2.1352 -3.0186 2.7303 10 8 1.5048 -2.4747 3.8819 11 6 1.5673 -4.7230 2.4785 12 6 1.9988 -5.5737 3.6452 13 1 2.5583 -5.1330 4.4571 14 6 1.6793 -6.9145 3.6760 15 7 0.9985 -7.4513 2.6871 16 14 2.2135 -7.9690 5.1225 17 1 3.5521 -8.5488 4.8447 18 1 2.2811 -7.1318 6.3471 19 1 1.2320 -9.0647 5.3256 20 6 2.0400 -0.7213 1.2493 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.1300 -0.7217 -1.2490 25 1 1.6766 -0.2075 -2.1393 26 1 1.8935 -2.6777 -2.1391 27 1 0.4399 -2.1637 -1.2492 28 1 3.1298 -2.8851 -0.0001 29 1 1.6768 -3.9129 -0.0003 30 1 2.0010 -5.1184 1.5601 31 1 0.4801 -4.7362 2.4021 32 1 0.7208 -6.9036 1.9361 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:04 Heat of formation + Delta-G solvation = -100.782220 kcal Electronic energy + Delta-G solvation = -14604.890235 eV Core-core repulsion = 12240.840419 eV Total energy + Delta-G solvation = -2364.049816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83467 -36.64966 -35.64580 -32.96533 -31.74834 -30.21104 -27.71019 -25.32467 -23.59142 -23.08074 -19.65490 -19.18948 -18.27103 -17.21848 -16.16766 -15.82101 -15.57241 -15.42383 -15.13877 -14.72032 -14.66140 -14.23663 -13.77411 -13.50000 -13.40783 -12.90616 -12.67586 -12.54851 -12.38962 -12.08374 -11.99020 -11.93097 -11.67684 -11.13661 -11.05611 -10.91665 -10.65028 -10.40526 -9.02825 -8.80691 -6.53743 0.78213 1.50022 1.59746 1.77777 1.98512 2.50214 2.95743 3.10609 3.66532 3.76584 3.98668 4.18928 4.29626 4.39187 4.46067 4.56354 4.63652 4.65487 4.77858 4.83272 4.90085 4.91431 5.05370 5.14863 5.18201 5.22661 5.37540 5.42130 5.44597 5.60278 5.64604 6.02652 6.40015 7.29160 8.61658 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047294 B = 0.006739 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.895644 B = 4153.646281 C = 4472.507581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.090 0.910 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.400 4.400 8 H 0.060 0.940 9 S 1.265 4.735 10 O -0.932 6.932 11 C -0.283 4.283 12 C -0.613 4.613 13 H 0.054 0.946 14 C -0.027 4.027 15 N -0.927 5.927 16 Si 1.117 2.883 17 H -0.253 1.253 18 H -0.278 1.278 19 H -0.282 1.282 20 C -0.089 4.089 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.078 0.922 31 H -0.010 1.010 32 H 0.258 0.742 33 H 0.042 0.958 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 12.679 -10.183 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.134 4.134 7 C -0.519 4.519 8 H 0.079 0.921 9 S 1.470 4.530 10 O -0.928 6.928 11 C -0.421 4.421 12 C -0.651 4.651 13 H 0.072 0.928 14 C -0.227 4.227 15 N -0.563 5.563 16 Si 0.937 3.063 17 H -0.177 1.177 18 H -0.203 1.203 19 H -0.208 1.208 20 C -0.128 4.128 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.008 0.992 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.227 11.549 -8.769 16.202 hybrid contribution -3.091 1.174 -0.583 3.358 sum 4.136 12.723 -9.351 16.323 Atomic orbital electron populations 1.21977 0.96780 1.01047 1.01417 1.21093 0.94919 0.99740 0.94531 0.89154 1.21555 1.01737 0.94361 0.96812 1.21570 1.00181 0.96702 0.97112 1.21340 1.02955 0.97514 0.91634 1.27445 1.05978 1.05867 1.12649 0.92101 1.68696 1.17835 0.84262 0.82180 1.92881 1.80200 1.75967 1.43744 1.25146 0.99864 1.13879 1.03223 1.21815 1.40242 0.96878 1.06194 0.92816 1.27480 0.93478 0.98051 1.03675 1.70884 1.36171 1.39674 1.09603 0.82958 0.77637 0.74143 0.71580 1.17691 1.20302 1.20794 1.21314 1.02514 0.90623 0.98357 0.93993 0.94178 0.91231 0.89789 0.90790 0.90245 0.93466 0.87699 0.93104 0.90402 0.99185 0.93228 0.93868 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.50 71.98 0.61 -2.94 16 2 C -0.08 -1.67 3.20 -10.79 -0.03 -1.70 16 3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.11 -1.79 5.45 30.59 0.17 -1.63 16 5 C -0.12 -2.44 5.65 30.59 0.17 -2.27 16 6 C -0.10 -2.44 4.95 30.60 0.15 -2.29 16 7 C -0.40 -12.47 2.44 30.60 0.07 -12.39 16 8 H 0.06 2.20 6.43 -2.39 -0.02 2.18 16 9 S 1.27 51.05 12.58 -56.49 -0.71 50.34 16 10 O -0.93 -50.07 18.14 -148.98 -2.70 -52.77 16 11 C -0.28 -14.46 4.39 71.24 0.31 -14.15 16 12 C -0.61 -35.66 9.13 25.60 0.23 -35.43 16 13 H 0.05 3.09 7.71 -2.91 -0.02 3.07 16 14 C -0.03 -1.58 5.46 84.65 0.46 -1.12 16 15 N -0.93 -57.28 13.65 21.45 0.29 -56.99 16 16 Si 1.12 50.64 29.90 68.60 2.05 52.69 16 17 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 C -0.09 -2.23 4.74 30.60 0.14 -2.09 16 21 H 0.04 1.11 4.81 -2.39 -0.01 1.10 16 22 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.05 1.11 6.43 -2.39 -0.02 1.10 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.50 6.51 -2.39 -0.02 1.49 16 30 H 0.08 3.70 6.76 -2.39 -0.02 3.69 16 31 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 32 H 0.26 16.00 7.22 -92.70 -0.67 15.33 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -78.27 276.66 2.39 -75.88 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.16 Total: 6.86 kcal Atomic # 6 Polarization: -78.30 SS G_CDS: 2.30 Total: -76.00 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.29 Total: -56.99 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -2.70 Total: -52.77 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Atomic # 16 Polarization: 51.05 SS G_CDS: -0.71 Total: 50.34 kcal Total: -78.27 2.39 -75.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.901 kcal (2) G-P(sol) polarization free energy of solvation -78.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds