Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46946 * 2 1 4 4 C 1.50702 * 109.47125 * 240.00254 * 2 1 3 5 5 H 1.07994 * 120.00085 * 240.00021 * 4 2 1 6 6 C 1.37874 * 119.99932 * 59.99880 * 4 2 1 7 7 N 1.31519 * 120.00161 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00080 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47081 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47259 * 119.99854 * 8 6 4 11 11 H 1.48502 * 109.46980 * 239.99858 * 8 6 4 12 12 S 1.81398 * 109.47305 * 120.00322 * 2 1 3 13 13 O 1.42102 * 109.47230 * 59.91427 * 12 2 1 14 14 C 1.81403 * 103.00097 * 176.30461 * 12 2 1 15 15 C 1.53005 * 109.47142 * 56.25328 * 14 12 2 16 16 C 1.52994 * 109.47123 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47319 * 300.00497 * 16 15 14 18 18 C 1.52997 * 109.47233 * 59.99655 * 17 16 15 19 19 C 1.52998 * 109.47116 * 300.00055 * 18 17 16 20 20 H 1.09001 * 109.46889 * 293.96131 * 1 2 3 21 21 H 1.09000 * 109.47105 * 53.96504 * 1 2 3 22 22 H 1.09007 * 109.46984 * 173.96483 * 1 2 3 23 23 H 0.97001 * 120.00296 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.46791 * 296.25563 * 14 12 2 25 25 H 1.09002 * 109.47232 * 300.00520 * 15 14 12 26 26 H 1.09000 * 109.46828 * 59.99931 * 15 14 12 27 27 H 1.08996 * 109.47377 * 179.97438 * 16 15 14 28 28 H 1.09000 * 109.47350 * 60.00219 * 16 15 14 29 29 H 1.09002 * 109.46497 * 299.99376 * 17 16 15 30 30 H 1.08997 * 109.47309 * 180.02562 * 17 16 15 31 31 H 1.09006 * 109.46855 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.46897 * 60.00608 * 18 17 16 33 33 H 1.09000 * 109.47689 * 300.00068 * 19 18 17 34 34 H 1.08998 * 109.46976 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1464 -2.2868 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 16 2.1347 -0.8552 1.4810 13 8 1.6594 -2.1944 1.4820 14 6 3.9337 -0.8522 1.2481 15 6 4.4217 0.5861 1.0635 16 6 5.9389 0.5886 0.8664 17 6 6.6138 -0.0254 2.0946 18 6 6.1258 -1.4637 2.2791 19 6 4.6086 -1.4661 2.4763 20 1 -0.3633 0.4174 0.9391 21 1 -0.3633 0.6046 -0.8310 22 1 -0.3633 -1.0220 -0.1081 23 1 0.7088 1.1616 -3.4843 24 1 4.1865 -1.4379 0.3642 25 1 3.9412 1.0234 0.1883 26 1 4.1688 1.1718 1.9474 27 1 6.2865 1.6132 0.7345 28 1 6.1914 0.0031 -0.0176 29 1 6.3614 0.5602 2.9786 30 1 7.6947 -0.0233 1.9543 31 1 6.6063 -1.9009 3.1544 32 1 6.3783 -2.0492 1.3950 33 1 4.3561 -0.8806 3.3603 34 1 4.2609 -2.4908 2.6073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789266.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = -71.821693 kcal Electronic energy + Delta-G solvation = -14925.411144 eV Core-core repulsion = 12562.617150 eV Total energy + Delta-G solvation = -2362.793993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.82567 -34.49021 -33.96599 -30.57911 -30.43184 -30.06377 -25.32277 -22.50184 -22.26716 -21.07471 -19.47155 -16.59632 -16.29445 -15.48923 -14.91291 -14.18893 -13.99259 -13.83487 -13.41089 -13.08328 -12.78607 -12.17223 -11.87607 -11.56765 -11.43844 -11.09309 -10.98360 -10.87578 -10.86832 -10.77247 -10.41466 -10.31062 -10.20012 -9.94360 -9.70423 -9.17650 -8.58641 -8.34498 -7.10054 -6.07316 -4.20783 2.76216 3.22247 3.30785 3.36131 3.83093 4.35821 4.84458 5.02462 5.13027 5.19722 5.23021 5.55008 5.64147 5.79381 5.85449 5.91539 5.94908 6.07968 6.27629 6.40468 6.41082 6.49924 6.57248 6.64936 6.74608 6.82579 6.84974 6.92720 7.43320 7.70620 7.80060 8.14881 8.79634 9.44650 10.94285 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.010216 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.264134 B = 2740.130123 C = 3264.518830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.229 4.229 3 H 0.079 0.921 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.073 3.927 7 N -0.881 5.881 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.282 1.282 12 S 1.176 4.824 13 O -0.872 6.872 14 C -0.392 4.392 15 C -0.091 4.091 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.092 4.092 20 H 0.017 0.983 21 H 0.089 0.911 22 H 0.034 0.966 23 H 0.261 0.739 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 3.142 9.685 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.350 4.350 3 H 0.097 0.903 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.130 4.130 7 N -0.518 5.518 8 Si 0.715 3.285 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 S 1.380 4.620 13 O -0.868 6.868 14 C -0.509 4.509 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.131 4.131 20 H 0.036 0.964 21 H 0.108 0.892 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.066 2.830 10.334 12.835 hybrid contribution 0.918 -1.573 -3.047 3.550 sum 7.985 1.257 7.287 10.883 Atomic orbital electron populations 1.21476 0.95572 1.00980 1.00014 1.24715 0.99283 1.03980 1.07014 0.90334 1.20838 1.32187 1.12068 0.90258 0.92826 1.24913 0.94565 0.94692 0.98861 1.69878 1.35999 1.22560 1.23402 0.86600 0.78876 0.79885 0.83171 1.19832 1.20794 1.20758 1.69129 0.85569 0.98326 1.08934 1.92997 1.73629 1.35739 1.84418 1.27263 1.19482 1.01440 1.02697 1.21193 0.95242 0.93716 1.02729 1.21506 0.96072 1.00052 0.97766 1.21518 0.98955 0.96226 0.98678 1.21496 0.95866 0.96891 1.00992 1.21179 0.94963 1.00369 0.96582 0.96384 0.89199 0.94699 0.92901 0.89055 0.89847 0.91628 0.92339 0.92322 0.92061 0.92875 0.92577 0.92431 0.91458 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.88 37.16 0.33 -2.56 16 2 C -0.23 -5.40 2.15 -27.88 -0.06 -5.46 16 3 H 0.08 1.80 7.13 -51.93 -0.37 1.43 16 4 C -0.52 -14.12 8.07 -34.44 -0.28 -14.40 16 5 H 0.05 1.54 6.84 -52.49 -0.36 1.18 16 6 C 0.07 2.03 5.30 -17.82 -0.09 1.94 16 7 N -0.88 -24.59 11.39 55.43 0.63 -23.96 16 8 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 S 1.18 23.26 12.08 -107.50 -1.30 21.96 16 13 O -0.87 -22.60 18.13 -35.23 -0.64 -23.24 16 14 C -0.39 -6.92 2.26 -26.73 -0.06 -6.98 16 15 C -0.09 -1.38 4.99 -26.73 -0.13 -1.52 16 16 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 17 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 18 C -0.11 -1.50 5.92 -26.73 -0.16 -1.65 16 19 C -0.09 -1.38 5.21 -26.73 -0.14 -1.52 16 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 21 H 0.09 2.32 6.26 -51.93 -0.32 1.99 16 22 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 24 H 0.09 1.91 7.22 -51.92 -0.37 1.54 16 25 H 0.08 1.46 6.64 -51.93 -0.34 1.12 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -33.05 279.05 -8.59 -41.64 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.56 Total: -1.91 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: -0.91 Total: -35.45 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.63 Total: -23.96 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.64 Total: -23.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 23.26 SS G_CDS: -1.30 Total: 21.96 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.05 -8.59 -41.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789266.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.182 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds