Wall clock time and date at job start Mon Mar 30 2020 02:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47509 * 2 1 4 4 C 1.50697 * 109.46961 * 120.00126 * 2 1 3 5 5 H 1.08003 * 120.00341 * 114.72547 * 4 2 1 6 6 C 1.37884 * 120.00093 * 294.72249 * 4 2 1 7 7 N 1.31515 * 120.00237 * 163.76968 * 6 4 2 8 8 Si 1.86803 * 119.99648 * 343.77338 * 6 4 2 9 9 H 1.48499 * 109.46719 * 272.37765 * 8 6 4 10 10 H 1.48502 * 109.46896 * 152.38112 * 8 6 4 11 11 H 1.48499 * 109.47011 * 32.37826 * 8 6 4 12 12 S 1.81403 * 109.46917 * 239.99722 * 2 1 3 13 13 O 1.42095 * 109.47071 * 172.15665 * 12 2 1 14 14 C 1.81394 * 103.00023 * 55.76670 * 12 2 1 15 15 C 1.52996 * 109.47398 * 174.62054 * 14 12 2 16 16 C 1.53007 * 109.47509 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47001 * 59.99915 * 16 15 14 18 18 C 1.53000 * 109.46857 * 300.00070 * 17 16 15 19 19 C 1.53003 * 109.47392 * 60.00691 * 18 17 16 20 20 H 1.09006 * 109.46872 * 294.16713 * 1 2 3 21 21 H 1.08996 * 109.46989 * 54.16380 * 1 2 3 22 22 H 1.08996 * 109.47468 * 174.16286 * 1 2 3 23 23 H 0.96997 * 119.99916 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.47446 * 294.61929 * 14 12 2 25 25 H 1.09004 * 109.47216 * 300.00148 * 15 14 12 26 26 H 1.09004 * 109.47248 * 59.99776 * 15 14 12 27 27 H 1.09004 * 109.46533 * 299.99788 * 16 15 14 28 28 H 1.08998 * 109.47222 * 180.02562 * 16 15 14 29 29 H 1.08992 * 109.47006 * 180.02562 * 17 16 15 30 30 H 1.08996 * 109.47153 * 59.99790 * 17 16 15 31 31 H 1.08994 * 109.47507 * 299.99979 * 18 17 16 32 32 H 1.09007 * 109.46745 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47470 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.47376 * 59.99208 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5812 -1.6356 1.1337 6 6 1.7913 -0.1794 2.4798 7 7 1.9350 -0.9280 3.5515 8 14 1.2605 1.6036 2.6503 9 1 2.4623 2.4722 2.7305 10 1 0.4511 1.7632 3.8850 11 1 0.4464 1.9925 1.4708 12 16 2.1347 -0.8552 -1.4811 13 8 3.5438 -0.6990 -1.5762 14 6 1.3332 0.0521 -2.8320 15 6 1.8510 -0.4689 -4.1741 16 6 1.1755 0.2969 -5.3135 17 6 1.4966 1.7874 -5.1869 18 6 0.9787 2.3084 -3.8448 19 6 1.6543 1.5428 -2.7054 20 1 -0.3633 0.4208 0.9377 21 1 -0.3633 0.6016 -0.8331 22 1 -0.3634 -1.0223 -0.1045 23 1 1.7650 -0.5545 4.4304 24 1 0.2543 -0.0934 -2.7776 25 1 2.9299 -0.3234 -4.2285 26 1 1.6227 -1.5310 -4.2641 27 1 0.0965 0.1516 -5.2592 28 1 1.5440 -0.0747 -6.2696 29 1 1.0150 2.3329 -5.9984 30 1 2.5755 1.9325 -5.2411 31 1 -0.1002 2.1633 -3.7906 32 1 1.2079 3.3703 -3.7545 33 1 1.2850 1.9136 -1.7493 34 1 2.7332 1.6879 -2.7597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:35 Heat of formation + Delta-G solvation = -66.343876 kcal Electronic energy + Delta-G solvation = -14858.425801 eV Core-core repulsion = 12495.869344 eV Total energy + Delta-G solvation = -2362.556457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.07382 -34.71918 -34.01439 -31.40690 -30.63276 -30.35948 -25.22708 -22.69215 -22.48188 -21.27864 -19.64068 -17.09712 -16.53742 -15.46677 -15.06856 -14.43246 -14.20633 -14.05126 -13.65216 -13.30248 -12.74655 -12.58276 -12.20449 -12.05965 -11.97142 -11.49318 -11.12056 -11.02616 -10.92638 -10.83228 -10.52222 -10.36646 -10.33140 -10.01343 -9.79424 -9.43694 -8.69106 -8.52625 -7.22247 -6.21065 -4.18934 2.44897 3.22166 3.31425 3.34196 3.64884 4.34913 4.64611 4.81926 4.86405 5.00895 5.11727 5.36473 5.39569 5.53460 5.63529 5.66203 5.75811 5.85469 6.06069 6.16077 6.20729 6.21955 6.26328 6.32770 6.35822 6.38837 6.41444 6.56734 6.86907 7.15310 7.54768 8.23116 8.80042 9.42521 10.90560 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039597 B = 0.008617 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.954542 B = 3248.623600 C = 3628.073684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.265 4.265 3 H 0.043 0.957 4 C -0.511 4.511 5 H 0.080 0.920 6 C 0.088 3.912 7 N -0.884 5.884 8 Si 0.865 3.135 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.254 1.254 12 S 1.224 4.776 13 O -0.860 6.860 14 C -0.420 4.420 15 C -0.093 4.093 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.114 4.114 20 H 0.055 0.945 21 H 0.030 0.970 22 H 0.061 0.939 23 H 0.267 0.733 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 2.070 -14.616 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.387 4.387 3 H 0.061 0.939 4 C -0.550 4.550 5 H 0.098 0.902 6 C -0.117 4.117 7 N -0.520 5.520 8 Si 0.692 3.308 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.178 1.178 12 S 1.426 4.574 13 O -0.855 6.855 14 C -0.535 4.535 15 C -0.132 4.132 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.152 4.152 20 H 0.074 0.926 21 H 0.049 0.951 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.133 0.867 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.742 1.270 -14.506 15.653 hybrid contribution 0.316 3.289 0.440 3.334 sum -5.426 4.559 -14.066 15.751 Atomic orbital electron populations 1.21897 0.95235 1.00987 1.00373 1.25051 0.99289 1.04490 1.09831 0.93882 1.20155 1.37542 1.09677 0.87579 0.90187 1.24856 0.94015 0.97318 0.95464 1.69947 1.48037 1.35509 0.98498 0.87148 0.79122 0.86462 0.78046 1.20647 1.21211 1.17806 1.69855 0.90056 1.11318 0.86128 1.93002 1.25578 1.82717 1.84224 1.27777 1.10063 1.04220 1.11406 1.21162 1.00281 0.99260 0.92460 1.21489 1.00607 0.95126 0.97881 1.21517 1.00903 0.96165 0.97043 1.21499 1.00152 0.98777 0.94788 1.21591 1.00796 0.93884 0.98910 0.92644 0.95077 0.92012 0.92352 0.86652 0.91845 0.91213 0.91932 0.92348 0.92543 0.92350 0.91999 0.92663 0.91430 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.13 37.16 0.30 -2.09 16 2 C -0.27 -5.95 1.63 -27.88 -0.05 -6.00 16 3 H 0.04 1.03 5.79 -51.92 -0.30 0.73 16 4 C -0.51 -14.03 9.00 -34.44 -0.31 -14.34 16 5 H 0.08 2.36 7.96 -52.48 -0.42 1.94 16 6 C 0.09 2.50 5.32 -17.82 -0.09 2.41 16 7 N -0.88 -26.35 13.96 55.43 0.77 -25.57 16 8 Si 0.87 21.19 25.83 -169.99 -4.39 16.80 16 9 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.25 -5.74 5.58 56.52 0.32 -5.42 16 12 S 1.22 23.20 12.10 -107.50 -1.30 21.90 16 13 O -0.86 -21.35 18.12 -35.23 -0.64 -21.99 16 14 C -0.42 -6.25 2.01 -26.73 -0.05 -6.31 16 15 C -0.09 -1.24 5.20 -26.73 -0.14 -1.38 16 16 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 18 C -0.11 -1.48 5.92 -26.73 -0.16 -1.63 16 19 C -0.11 -1.83 4.96 -26.73 -0.13 -1.96 16 20 H 0.05 1.14 5.07 -51.93 -0.26 0.88 16 21 H 0.03 0.49 6.64 -51.93 -0.34 0.14 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.12 1.45 7.38 -51.92 -0.38 1.07 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.07 1.15 6.21 -51.93 -0.32 0.83 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -33.41 272.59 -7.88 -41.29 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.48 Total: -2.27 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: -0.95 Total: -34.27 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.64 Total: -21.99 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.39 Total: 16.80 kcal Atomic # 16 Polarization: 23.20 SS G_CDS: -1.30 Total: 21.90 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.41 -7.88 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.052 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds