Wall clock time and date at job start Mon Mar 30 2020 02:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47509 * 2 1 4 4 C 1.50697 * 109.46961 * 120.00126 * 2 1 3 5 5 H 1.08003 * 120.00341 * 114.72547 * 4 2 1 6 6 C 1.37884 * 120.00093 * 294.72249 * 4 2 1 7 7 N 1.31515 * 120.00237 * 163.76968 * 6 4 2 8 8 Si 1.86803 * 119.99648 * 343.77338 * 6 4 2 9 9 H 1.48499 * 109.46719 * 272.37765 * 8 6 4 10 10 H 1.48502 * 109.46896 * 152.38112 * 8 6 4 11 11 H 1.48499 * 109.47011 * 32.37826 * 8 6 4 12 12 S 1.81403 * 109.46917 * 239.99722 * 2 1 3 13 13 O 1.42095 * 109.47071 * 172.15665 * 12 2 1 14 14 C 1.81394 * 103.00023 * 55.76670 * 12 2 1 15 15 C 1.52996 * 109.47398 * 174.62054 * 14 12 2 16 16 C 1.53007 * 109.47509 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47001 * 59.99915 * 16 15 14 18 18 C 1.53000 * 109.46857 * 300.00070 * 17 16 15 19 19 C 1.53003 * 109.47392 * 60.00691 * 18 17 16 20 20 H 1.09006 * 109.46872 * 294.16713 * 1 2 3 21 21 H 1.08996 * 109.46989 * 54.16380 * 1 2 3 22 22 H 1.08996 * 109.47468 * 174.16286 * 1 2 3 23 23 H 0.96997 * 119.99916 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.47446 * 294.61929 * 14 12 2 25 25 H 1.09004 * 109.47216 * 300.00148 * 15 14 12 26 26 H 1.09004 * 109.47248 * 59.99776 * 15 14 12 27 27 H 1.09004 * 109.46533 * 299.99788 * 16 15 14 28 28 H 1.08998 * 109.47222 * 180.02562 * 16 15 14 29 29 H 1.08992 * 109.47006 * 180.02562 * 17 16 15 30 30 H 1.08996 * 109.47153 * 59.99790 * 17 16 15 31 31 H 1.08994 * 109.47507 * 299.99979 * 18 17 16 32 32 H 1.09007 * 109.46745 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47470 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.47376 * 59.99208 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5812 -1.6356 1.1337 6 6 1.7913 -0.1794 2.4798 7 7 1.9350 -0.9280 3.5515 8 14 1.2605 1.6036 2.6503 9 1 2.4623 2.4722 2.7305 10 1 0.4511 1.7632 3.8850 11 1 0.4464 1.9925 1.4708 12 16 2.1347 -0.8552 -1.4811 13 8 3.5438 -0.6990 -1.5762 14 6 1.3332 0.0521 -2.8320 15 6 1.8510 -0.4689 -4.1741 16 6 1.1755 0.2969 -5.3135 17 6 1.4966 1.7874 -5.1869 18 6 0.9787 2.3084 -3.8448 19 6 1.6543 1.5428 -2.7054 20 1 -0.3633 0.4208 0.9377 21 1 -0.3633 0.6016 -0.8331 22 1 -0.3634 -1.0223 -0.1045 23 1 1.7650 -0.5545 4.4304 24 1 0.2543 -0.0934 -2.7776 25 1 2.9299 -0.3234 -4.2285 26 1 1.6227 -1.5310 -4.2641 27 1 0.0965 0.1516 -5.2592 28 1 1.5440 -0.0747 -6.2696 29 1 1.0150 2.3329 -5.9984 30 1 2.5755 1.9325 -5.2411 31 1 -0.1002 2.1633 -3.7906 32 1 1.2079 3.3703 -3.7545 33 1 1.2850 1.9136 -1.7493 34 1 2.7332 1.6879 -2.7597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:35 Heat of formation + Delta-G solvation = -89.958758 kcal Electronic energy + Delta-G solvation = -14859.449819 eV Core-core repulsion = 12495.869344 eV Total energy + Delta-G solvation = -2363.580475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.14022 -36.52029 -35.92959 -33.25609 -31.69060 -31.57486 -27.12695 -23.91242 -23.58528 -22.93917 -20.69388 -19.05660 -18.18023 -16.92003 -16.72058 -15.93384 -15.45806 -15.30332 -15.03291 -14.85149 -14.52035 -14.06931 -13.68539 -13.33357 -13.09089 -13.03781 -12.89374 -12.74981 -12.18707 -12.09020 -12.02658 -11.80191 -11.54469 -11.41768 -11.30490 -11.05229 -10.69339 -10.26385 -8.83934 -8.37641 -6.38764 0.91350 1.25922 1.31952 1.40232 2.10534 2.29342 2.95605 3.15576 3.73659 3.76856 4.03951 4.29550 4.32309 4.48990 4.50622 4.58820 4.63992 4.67739 4.72980 4.86151 4.94276 5.05324 5.14674 5.22203 5.24680 5.27248 5.33024 5.35449 5.53357 5.56691 5.68018 6.05586 6.63534 7.24928 8.77610 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039597 B = 0.008617 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.954542 B = 3248.623600 C = 3628.073684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.276 4.276 3 H 0.027 0.973 4 C -0.518 4.518 5 H 0.042 0.958 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.919 3.081 9 H -0.294 1.294 10 H -0.278 1.278 11 H -0.219 1.219 12 S 1.254 4.746 13 O -0.928 6.928 14 C -0.400 4.400 15 C -0.099 4.099 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.120 4.120 20 H 0.039 0.961 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.268 0.732 24 H 0.158 0.842 25 H 0.033 0.967 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 3.165 -17.323 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.396 4.396 3 H 0.045 0.955 4 C -0.557 4.557 5 H 0.060 0.940 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.744 3.256 9 H -0.221 1.221 10 H -0.204 1.204 11 H -0.141 1.141 12 S 1.459 4.541 13 O -0.924 6.924 14 C -0.519 4.519 15 C -0.138 4.138 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.159 4.159 20 H 0.058 0.942 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.176 0.824 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.713 2.349 -17.188 19.413 hybrid contribution 1.285 2.906 1.157 3.382 sum -7.428 5.256 -16.032 18.434 Atomic orbital electron populations 1.21865 0.91860 1.03439 1.01273 1.25134 1.02032 1.02959 1.09453 0.95518 1.20481 1.36516 1.08719 0.89979 0.94004 1.25678 0.94582 1.01332 0.95207 1.70068 1.50318 1.37493 0.99136 0.86278 0.78769 0.80965 0.79629 1.22105 1.20366 1.14130 1.68924 0.87931 1.11408 0.85815 1.92902 1.29490 1.84521 1.85509 1.27617 1.11619 1.02905 1.09722 1.21285 0.98788 1.01403 0.92303 1.21497 1.01749 0.94021 0.97316 1.21567 1.00099 0.97115 0.97143 1.21503 1.01026 0.98465 0.93836 1.21631 0.99107 0.95038 1.00076 0.94221 0.90947 0.89609 0.92237 0.82397 0.94838 0.88631 0.89539 0.90696 0.90113 0.94117 0.89729 0.92408 0.92438 0.95461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 8.13 71.98 0.59 -3.77 16 2 C -0.28 -12.19 1.63 29.85 0.05 -12.14 16 3 H 0.03 1.26 5.79 -2.39 -0.01 1.24 16 4 C -0.52 -29.28 9.00 25.60 0.23 -29.05 16 5 H 0.04 2.61 7.96 -2.91 -0.02 2.59 16 6 C 0.03 1.87 5.32 84.66 0.45 2.32 16 7 N -0.93 -57.45 13.96 21.45 0.30 -57.15 16 8 Si 0.92 43.78 25.83 68.60 1.77 45.55 16 9 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.22 -9.12 5.58 99.48 0.55 -8.56 16 12 S 1.25 47.00 12.10 -56.49 -0.68 46.32 16 13 O -0.93 -47.83 18.12 -148.98 -2.70 -50.53 16 14 C -0.40 -10.64 2.01 30.60 0.06 -10.58 16 15 C -0.10 -2.33 5.20 30.60 0.16 -2.17 16 16 C -0.11 -1.89 5.92 30.60 0.18 -1.71 16 17 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 18 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 19 C -0.12 -3.60 4.96 30.60 0.15 -3.45 16 20 H 0.04 1.50 5.07 -2.38 -0.01 1.49 16 21 H 0.07 1.91 6.64 -2.39 -0.02 1.89 16 22 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 24 H 0.16 2.99 7.38 -2.39 -0.02 2.97 16 25 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.82 6.21 -2.39 -0.01 1.80 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -77.09 272.59 1.83 -75.27 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.91 Total: 5.57 kcal Atomic # 6 Polarization: -67.24 SS G_CDS: 2.23 Total: -65.01 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.30 Total: -57.15 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -2.70 Total: -50.53 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.77 Total: 45.55 kcal Atomic # 16 Polarization: 47.00 SS G_CDS: -0.68 Total: 46.32 kcal Total: -77.09 1.83 -75.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.694 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds