Wall clock time and date at job start Mon Mar 30 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46465 * 2 1 4 4 C 1.50697 * 109.47159 * 240.00204 * 2 1 3 5 5 H 1.08003 * 119.99826 * 240.00111 * 4 2 1 6 6 C 1.37870 * 120.00101 * 59.99676 * 4 2 1 7 7 N 1.31518 * 120.00420 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99748 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47293 * 60.00236 * 8 6 4 10 10 H 1.48505 * 109.46854 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47042 * 299.99760 * 8 6 4 12 12 S 1.81397 * 109.47011 * 119.99818 * 2 1 3 13 13 O 1.42100 * 109.46829 * 188.61754 * 12 2 1 14 14 C 1.81404 * 103.00143 * 305.00094 * 12 2 1 15 15 C 1.53000 * 109.46946 * 180.02562 * 14 12 2 16 16 C 1.54268 * 110.03010 * 292.90417 * 15 14 12 17 17 C 1.54962 * 104.16016 * 217.13690 * 16 15 14 18 18 C 1.54891 * 102.77626 * 37.89151 * 17 16 15 19 19 C 1.53876 * 110.02883 * 175.69094 * 15 14 12 20 20 H 1.09002 * 109.46979 * 299.99827 * 1 2 3 21 21 H 1.08998 * 109.47306 * 60.00192 * 1 2 3 22 22 H 1.09006 * 109.46941 * 179.97438 * 1 2 3 23 23 H 0.97001 * 120.00047 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.47124 * 60.00087 * 14 12 2 25 25 H 1.09001 * 109.46975 * 300.00209 * 14 12 2 26 26 H 1.08995 * 110.01931 * 54.29621 * 15 14 12 27 27 H 1.09001 * 110.49106 * 335.78894 * 16 15 14 28 28 H 1.09005 * 110.48252 * 98.43414 * 16 15 14 29 29 H 1.08996 * 110.72203 * 279.57767 * 17 16 15 30 30 H 1.09006 * 110.92226 * 156.29626 * 17 16 15 31 31 H 1.09004 * 110.48670 * 203.40017 * 18 17 16 32 32 H 1.09008 * 110.59690 * 80.81651 * 18 17 16 33 33 H 1.08995 * 110.03269 * 238.56224 * 19 15 14 34 34 H 1.08997 * 110.03631 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8259 -2.5202 -4.0076 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 16 2.1347 -0.8551 1.4811 13 8 3.5414 -0.6837 1.5858 14 6 1.3148 0.0375 2.8309 15 6 1.7289 -0.5729 4.1714 16 6 1.1654 -2.0035 4.2971 17 6 0.7784 -2.1285 5.7924 18 6 0.2169 -0.7225 6.1195 19 6 1.1264 0.2413 5.3298 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7095 1.1618 -3.4844 24 1 0.2339 -0.0404 2.7142 25 1 1.6086 1.0868 2.8037 26 1 2.8156 -0.5911 4.2534 27 1 0.2862 -2.1242 3.6642 28 1 1.9277 -2.7379 4.0369 29 1 1.6561 -2.3451 6.4011 30 1 0.0137 -2.8923 5.9340 31 1 0.2869 -0.5230 7.1889 32 1 -0.8161 -0.6342 5.7829 33 1 1.9207 0.6175 5.9745 34 1 0.5387 1.0710 4.9370 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:39 Heat of formation + Delta-G solvation = -89.552999 kcal Electronic energy + Delta-G solvation = -14404.988302 eV Core-core repulsion = 12041.425421 eV Total energy + Delta-G solvation = -2363.562880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.09690 -36.52411 -35.97831 -32.54197 -31.96015 -29.48732 -27.40267 -25.90658 -23.38003 -21.44820 -20.54879 -18.70866 -18.08141 -17.11024 -16.70526 -15.97763 -15.57540 -15.41452 -15.07403 -14.67464 -14.11524 -14.04433 -13.63040 -13.10905 -12.82995 -12.71120 -12.61812 -12.22698 -12.17925 -12.02561 -11.90416 -11.78859 -11.69700 -11.37750 -11.30174 -11.16458 -10.63648 -10.35958 -8.87888 -8.17579 -6.37692 0.91929 1.40908 1.43504 1.51124 2.14273 2.39265 3.03904 3.18445 3.72425 3.78166 3.86491 4.31812 4.44898 4.61509 4.67181 4.72064 4.80290 4.88494 4.92602 4.96656 5.00396 5.06666 5.12240 5.20200 5.34791 5.43014 5.43876 5.53017 5.61311 5.64379 5.88877 6.19658 6.71168 7.30985 8.86249 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053955 B = 0.006286 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.827637 B = 4453.487917 C = 4605.232551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.242 4.242 3 H -0.008 1.008 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.251 1.251 10 H -0.279 1.279 11 H -0.282 1.282 12 S 1.245 4.755 13 O -0.938 6.938 14 C -0.430 4.430 15 C -0.075 4.075 16 C -0.136 4.136 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.120 4.120 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.265 0.735 24 H 0.144 0.856 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 -6.676 14.161 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.362 4.362 3 H 0.011 0.989 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.175 1.175 10 H -0.204 1.204 11 H -0.208 1.208 12 S 1.451 4.549 13 O -0.933 6.933 14 C -0.568 4.568 15 C -0.094 4.094 16 C -0.174 4.174 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.159 4.159 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.162 0.838 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.089 -7.323 14.100 17.015 hybrid contribution 1.339 2.608 -1.225 3.177 sum -4.749 -4.715 12.876 14.511 Atomic orbital electron populations 1.21462 0.92646 1.02099 1.01314 1.24828 1.01867 1.01303 1.08184 0.98941 1.20820 1.32373 1.13164 0.90734 0.92197 1.25761 0.94720 0.95538 1.01983 1.70009 1.36799 1.23628 1.24402 0.85616 0.78286 0.79832 0.78093 1.17517 1.20428 1.20786 1.68706 0.87217 1.12887 0.86098 1.92871 1.29582 1.85199 1.85697 1.27775 1.11656 1.07734 1.09681 1.21419 0.98803 0.97131 0.92081 1.22724 1.02113 0.93877 0.98650 1.22500 1.01069 0.97341 0.94829 1.22364 0.99207 0.94380 0.99761 1.22261 0.99153 0.98545 0.95921 0.93230 0.92344 0.91029 0.92631 0.83775 0.92285 0.93810 0.88473 0.91095 0.91766 0.89425 0.90857 0.90513 0.92409 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.72 71.98 0.63 -4.31 16 2 C -0.24 -12.13 2.82 29.85 0.08 -12.05 16 3 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 4 C -0.53 -29.67 8.58 25.60 0.22 -29.45 16 5 H 0.06 3.28 7.71 -2.91 -0.02 3.25 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 8 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 9 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 S 1.25 50.54 12.12 -56.49 -0.68 49.86 16 13 O -0.94 -50.52 18.14 -148.98 -2.70 -53.22 16 14 C -0.43 -13.58 4.42 71.98 0.32 -13.26 16 15 C -0.07 -2.04 2.93 -10.07 -0.03 -2.07 16 16 C -0.14 -2.85 5.87 31.70 0.19 -2.66 16 17 C -0.12 -1.98 6.91 31.91 0.22 -1.76 16 18 C -0.12 -2.01 6.83 31.67 0.22 -1.80 16 19 C -0.12 -2.70 6.46 31.32 0.20 -2.50 16 20 H 0.05 1.72 6.51 -2.39 -0.02 1.70 16 21 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 22 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 23 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.14 3.64 6.78 -2.39 -0.02 3.63 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 1.69 7.77 -2.39 -0.02 1.67 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.44 7.67 -2.39 -0.02 1.43 16 Total: -1.00 -73.63 283.53 2.43 -71.20 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.05 Total: 7.20 kcal Atomic # 6 Polarization: -70.73 SS G_CDS: 2.49 Total: -68.23 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.24 Total: -52.18 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -2.70 Total: -53.22 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.68 Total: 49.86 kcal Total: -73.63 2.43 -71.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.350 kcal (2) G-P(sol) polarization free energy of solvation -73.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds