Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31057 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48497 * 109.47074 * 240.00464 * 3 2 1 5 5 H 1.48499 * 109.47216 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46877 * 119.99970 * 3 2 1 7 7 C 1.39739 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99753 * 179.97438 * 7 2 1 9 9 C 1.40892 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.38905 * 126.92854 * 0.02562 * 9 7 2 11 11 N 1.35644 * 109.27929 * 180.02562 * 10 9 7 12 12 H 0.96996 * 124.69040 * 179.97438 * 11 10 9 13 13 C 1.38144 * 110.61934 * 359.97438 * 11 10 9 14 14 C 1.39123 * 132.80287 * 179.97438 * 13 11 10 15 15 C 1.37859 * 119.97067 * 180.02562 * 14 13 11 16 16 C 1.38668 * 120.62523 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.25363 * 359.95943 * 16 15 14 18 18 C 1.50699 * 120.15513 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47077 * 265.07571 * 18 17 16 20 20 N 1.46902 * 109.47038 * 180.02562 * 19 18 17 21 21 C 1.39189 * 119.69434 * 0.06948 * 17 16 15 22 22 H 0.97003 * 120.00046 * 359.97438 * 1 2 3 23 23 H 1.07991 * 125.36113 * 359.72509 * 10 9 7 24 24 H 1.07998 * 120.01479 * 0.02777 * 14 13 11 25 25 H 1.08001 * 119.68520 * 179.97438 * 15 14 13 26 26 H 1.07999 * 119.87471 * 180.02562 * 16 15 14 27 27 H 1.08999 * 109.47101 * 25.07778 * 18 17 16 28 28 H 1.09004 * 109.47568 * 145.07205 * 18 17 16 29 29 H 1.09005 * 109.47361 * 299.99610 * 19 18 17 30 30 H 1.08997 * 109.47625 * 59.99950 * 19 18 17 31 31 H 1.00903 * 110.99645 * 180.02562 * 20 19 18 32 32 H 1.00898 * 111.00164 * 303.95180 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2445 1.6178 0.0000 4 1 3.0982 1.6965 -1.2125 5 1 1.2795 2.7465 0.0006 6 1 3.0982 1.6964 1.2125 7 6 2.0093 -1.2102 -0.0005 8 1 3.0893 -1.2101 -0.0010 9 6 1.3048 -2.4303 -0.0016 10 6 -0.0741 -2.5979 -0.0028 11 7 -0.3642 -3.9230 -0.0030 12 1 -1.2613 -4.2917 -0.0034 13 6 0.7948 -4.6747 -0.0026 14 6 1.0324 -6.0455 -0.0022 15 6 2.3267 -6.5201 -0.0014 16 6 3.4008 -5.6430 -0.0004 17 6 3.1855 -4.2812 -0.0011 18 6 4.3543 -3.3300 0.0006 19 6 4.6693 -2.9117 1.4381 20 7 5.8083 -1.9839 1.4397 21 6 1.8835 -3.7890 -0.0013 22 1 -0.4850 0.8401 0.0004 23 1 -0.8007 -1.7991 0.0012 24 1 0.2033 -6.7375 -0.0026 25 1 2.5059 -7.5852 -0.0006 26 1 4.4098 -6.0280 -0.0001 27 1 5.2243 -3.8227 -0.4334 28 1 4.1053 -2.4472 -0.5884 29 1 3.7993 -2.4189 1.8722 30 1 4.9184 -3.7943 2.0272 31 1 6.0365 -1.6931 2.3786 32 1 6.6096 -2.3942 0.9839 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082911897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = 20.621692 kcal Electronic energy + Delta-G solvation = -15724.396477 eV Core-core repulsion = 13262.459930 eV Total energy + Delta-G solvation = -2461.936547 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40973 -37.84232 -36.27946 -35.15894 -32.89344 -30.72961 -29.45373 -28.32523 -26.31062 -23.59447 -22.28740 -22.09390 -21.07861 -18.53648 -17.65464 -17.02653 -16.67961 -15.96860 -15.82817 -15.70998 -15.12205 -14.72930 -14.29951 -14.08382 -13.66274 -13.18565 -12.91973 -12.91069 -12.76165 -12.43449 -12.12673 -11.89634 -11.79951 -11.37132 -11.18526 -11.07770 -9.94254 -9.50760 -8.67147 -8.34621 -8.33221 -5.87932 0.59248 1.06452 1.43437 1.44400 1.54691 2.34919 2.36552 2.95371 3.15319 3.67126 3.78373 4.19575 4.27713 4.44643 4.47872 4.53579 4.72534 4.80716 4.89805 5.02739 5.21460 5.31860 5.36745 5.45003 5.60624 5.79235 5.93123 6.04105 6.17115 6.31504 6.34367 6.65018 6.74531 6.88822 7.21690 7.31660 7.47358 8.65156 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.011586 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.053462 B = 2416.215028 C = 3594.584593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.009 3.991 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.439 4.439 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.118 4.118 11 N -0.590 5.590 12 H 0.408 0.592 13 C 0.070 3.930 14 C -0.163 4.163 15 C -0.103 4.103 16 C -0.184 4.184 17 C -0.041 4.041 18 C -0.071 4.071 19 C 0.084 3.916 20 N -0.855 5.855 21 C -0.159 4.159 22 H 0.275 0.725 23 H 0.176 0.824 24 H 0.129 0.871 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.349 0.651 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -7.286 1.600 9.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.102 0.898 9 C -0.023 4.023 10 C -0.242 4.242 11 N -0.193 5.193 12 H 0.243 0.757 13 C -0.041 4.041 14 C -0.184 4.184 15 C -0.122 4.122 16 C -0.204 4.204 17 C -0.042 4.042 18 C -0.108 4.108 19 C -0.047 4.047 20 N -0.386 5.386 21 C -0.166 4.166 22 H 0.085 0.915 23 H 0.193 0.807 24 H 0.147 0.853 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.162 0.838 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.310 -6.554 1.175 8.517 hybrid contribution -0.160 0.134 0.541 0.580 sum 5.150 -6.420 1.716 8.407 Atomic orbital electron populations 1.69555 1.08230 1.28514 1.43090 1.26446 0.95584 1.03555 0.94153 0.85287 0.78285 0.76842 0.79473 1.19297 1.20095 1.19150 1.19232 0.94735 0.89718 1.43508 0.89829 1.18490 0.91451 0.90668 1.01708 1.23153 0.97958 0.83179 1.19914 1.41394 1.06071 1.05621 1.66228 0.75652 1.18715 0.86917 0.93316 1.05121 1.20193 0.98397 0.90428 1.09430 1.20921 0.91006 1.00060 1.00255 1.20827 0.99550 0.91449 1.08552 1.19412 0.92268 0.94537 0.98006 1.20487 0.95193 0.97883 0.97250 1.21470 0.93770 0.93676 0.95782 1.58570 1.09755 1.45305 1.24986 1.19596 0.93117 0.94040 1.09804 0.91483 0.80748 0.85265 0.83335 0.84623 0.90158 0.92048 0.93629 0.94949 0.83824 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.22 10.33 21.80 0.23 -47.00 16 2 C 0.01 0.48 5.49 85.17 0.47 0.95 16 3 Si 0.98 42.48 29.56 68.60 2.03 44.51 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.44 -24.63 8.67 23.28 0.20 -24.43 16 8 H 0.08 4.56 4.79 -2.91 -0.01 4.54 16 9 C -0.02 -0.99 6.10 -19.98 -0.12 -1.11 16 10 C -0.12 -6.32 10.89 84.26 0.92 -5.40 16 11 N -0.59 -26.72 5.99 -184.94 -1.11 -27.83 16 12 H 0.41 15.10 8.96 -92.71 -0.83 14.27 16 13 C 0.07 3.16 7.23 38.88 0.28 3.44 16 14 C -0.16 -5.93 10.07 22.39 0.23 -5.70 16 15 C -0.10 -3.34 10.01 22.28 0.22 -3.12 16 16 C -0.18 -6.36 9.68 22.29 0.22 -6.15 16 17 C -0.04 -1.73 5.15 -19.72 -0.10 -1.83 16 18 C -0.07 -2.68 5.02 29.85 0.15 -2.53 16 19 C 0.08 2.97 6.41 86.30 0.55 3.52 16 20 N -0.85 -25.26 9.62 -186.72 -1.80 -27.06 16 21 C -0.16 -7.89 6.15 -20.04 -0.12 -8.01 16 22 H 0.27 13.95 8.30 -92.71 -0.77 13.18 16 23 H 0.18 9.80 5.68 -2.92 -0.02 9.79 16 24 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 25 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 26 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 27 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 28 H 0.06 2.74 5.72 -2.39 -0.01 2.73 16 29 H 0.05 1.98 7.82 -2.38 -0.02 1.96 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.35 8.79 9.08 -89.69 -0.81 7.97 16 32 H 0.35 8.30 8.99 -89.70 -0.81 7.49 16 Total: -1.00 -64.40 267.42 0.96 -63.43 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -1.27 Total: 44.31 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 2.89 Total: -50.37 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -2.68 Total: -101.88 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -64.40 0.96 -63.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082911897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.054 kcal (2) G-P(sol) polarization free energy of solvation -64.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds