Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38751 * 119.82038 * 2 1 4 4 C 1.37898 * 120.64719 * 180.02562 * 3 2 1 5 5 C 1.38956 * 119.92207 * 359.97312 * 4 3 2 6 6 C 1.40694 * 119.45891 * 0.05336 * 5 4 3 7 7 C 1.37779 * 119.81375 * 180.02562 * 2 1 3 8 8 C 1.46669 * 106.08071 * 179.97438 * 6 5 4 9 9 C 1.50696 * 126.47729 * 180.26576 * 8 6 5 10 10 N 1.46903 * 109.47492 * 79.70553 * 9 8 6 11 11 C 1.34302 * 107.04456 * 359.97438 * 8 6 5 12 12 N 1.36993 * 109.93699 * 0.02562 * 11 8 6 13 13 C 1.37209 * 125.09477 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99990 * 158.96487 * 13 12 11 15 15 C 1.38853 * 119.99892 * 338.97357 * 13 12 11 16 16 N 1.31446 * 120.00101 * 349.14422 * 15 13 12 17 17 Si 1.86799 * 120.00269 * 169.15058 * 15 13 12 18 18 H 1.48497 * 109.47173 * 89.99499 * 17 15 13 19 19 H 1.48500 * 109.47291 * 209.99666 * 17 15 13 20 20 H 1.48506 * 109.46999 * 329.99415 * 17 15 13 21 21 H 1.08993 * 109.47237 * 269.97884 * 1 2 3 22 22 H 1.08997 * 109.46915 * 29.97699 * 1 2 3 23 23 H 1.08996 * 109.47009 * 149.97172 * 1 2 3 24 24 H 1.07998 * 119.67462 * 0.02590 * 3 2 1 25 25 H 1.08001 * 120.04001 * 180.02562 * 4 3 2 26 26 H 1.07992 * 120.17617 * 0.02562 * 7 2 1 27 27 H 1.08991 * 109.47205 * 199.70827 * 9 8 6 28 28 H 1.09002 * 109.46498 * 319.70242 * 9 8 6 29 29 H 1.00896 * 110.99782 * 56.04353 * 10 9 8 30 30 H 1.00899 * 110.99995 * 180.02562 * 10 9 8 31 31 H 1.08004 * 125.03064 * 180.02562 * 11 8 6 32 32 H 0.96995 * 119.99706 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2038 0.0000 4 6 3.5758 1.2237 -0.0005 5 6 4.2863 0.0295 -0.0005 6 6 3.5872 -1.1915 -0.0011 7 6 2.1920 -1.1954 -0.0005 8 6 4.6084 -2.2443 -0.0015 9 6 4.3624 -3.7310 -0.0078 10 7 4.0428 -4.1688 -1.3732 11 6 5.8042 -1.6329 -0.0018 12 7 5.6338 -0.2736 -0.0010 13 6 6.6496 0.6488 -0.0015 14 1 6.4622 1.6583 -0.3365 15 6 7.9185 0.2843 0.4286 16 7 8.1017 -0.8686 1.0328 17 14 9.3652 1.4324 0.1488 18 1 9.5043 2.3458 1.3113 19 1 10.6080 0.6343 -0.0051 20 1 9.1334 2.2298 -1.0824 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5143 24 1 1.6488 2.1343 0.0004 25 1 4.1029 2.1663 -0.0001 26 1 1.6519 -2.1306 -0.0014 27 1 5.2563 -4.2487 0.3398 28 1 3.5276 -3.9639 0.6532 29 1 4.7737 -3.9064 -2.0174 30 1 3.8731 -5.1629 -1.4038 31 1 6.7588 -2.1380 -0.0025 32 1 8.9881 -1.1230 1.3335 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084840552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 45.241166 kcal Electronic energy + Delta-G solvation = -15522.499481 eV Core-core repulsion = 13061.630514 eV Total energy + Delta-G solvation = -2460.868967 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04329 -36.49151 -34.43598 -32.95503 -30.85710 -30.21913 -28.02727 -26.07357 -24.92814 -22.99733 -21.44186 -19.92465 -18.59144 -17.56382 -15.66316 -15.31637 -14.86752 -14.43946 -14.13566 -13.67783 -13.31135 -13.15411 -12.96338 -12.69977 -12.28958 -11.88143 -11.49692 -11.45591 -11.31933 -11.15453 -10.70856 -10.56580 -10.41931 -10.08946 -9.71934 -9.16043 -8.44392 -8.07980 -6.94507 -6.85740 -6.51004 -4.28243 2.26277 2.66068 2.99180 3.01972 3.06795 3.79739 3.97717 4.69756 4.85462 5.08626 5.43017 5.67905 5.73345 5.87998 6.01729 6.09415 6.14284 6.19167 6.34674 6.44516 6.55964 6.61476 6.94471 7.01322 7.15919 7.16367 7.22832 7.53243 7.60716 7.66828 7.79076 8.01747 8.08873 8.22895 8.46724 9.01071 9.44384 10.27756 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.009149 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.241235 B = 3059.871689 C = 4043.953358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.146 4.146 3 C -0.134 4.134 4 C -0.109 4.109 5 C 0.049 3.951 6 C -0.090 4.090 7 C -0.073 4.073 8 C -0.256 4.256 9 C 0.156 3.844 10 N -0.847 5.847 11 C 0.096 3.904 12 N -0.291 5.291 13 C -0.338 4.338 14 H 0.105 0.895 15 C 0.041 3.959 16 N -0.855 5.855 17 Si 0.938 3.062 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.265 1.265 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.338 0.662 30 H 0.325 0.675 31 H 0.167 0.833 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 -1.511 -1.786 5.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C -0.154 4.154 4 C -0.129 4.129 5 C -0.061 4.061 6 C -0.096 4.096 7 C -0.092 4.092 8 C -0.263 4.263 9 C 0.026 3.974 10 N -0.376 5.376 11 C -0.041 4.041 12 N 0.046 4.954 13 C -0.466 4.466 14 H 0.122 0.878 15 C -0.167 4.167 16 N -0.487 5.487 17 Si 0.763 3.237 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.189 1.189 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.184 0.816 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.826 -0.898 -1.607 5.165 hybrid contribution 1.761 -0.010 0.133 1.766 sum -3.065 -0.908 -1.474 3.520 Atomic orbital electron populations 1.20547 0.92743 1.01198 1.00718 1.19279 0.94534 0.93107 1.07856 1.20288 0.92812 0.96430 1.05856 1.19834 0.93228 0.95077 1.04763 1.18398 0.84373 0.94769 1.08595 1.18767 0.92273 0.92095 1.06485 1.20088 0.92065 0.96130 1.00877 1.19643 0.91514 0.92677 1.22484 1.19680 0.97599 0.91204 0.88907 1.58831 1.51327 1.18777 1.08675 1.21870 0.98237 0.82755 1.01199 1.40133 1.02441 1.04933 1.47857 1.19822 0.87897 0.94409 1.44433 0.87767 1.25479 0.99603 0.97536 0.94050 1.69894 1.24275 1.21425 1.33134 0.85742 0.79219 0.79375 0.79384 1.19713 1.20132 1.18888 0.92805 0.92862 0.92727 0.87713 0.87738 0.87782 0.96162 0.92020 0.85023 0.86383 0.81563 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.00 36.01 0.36 -1.07 16 2 C -0.15 -2.85 5.88 -104.60 -0.62 -3.46 16 3 C -0.13 -2.67 9.67 -39.52 -0.38 -3.05 16 4 C -0.11 -2.46 9.95 -39.44 -0.39 -2.85 16 5 C 0.05 1.25 6.75 -83.84 -0.57 0.68 16 6 C -0.09 -2.17 6.35 -105.09 -0.67 -2.84 16 7 C -0.07 -1.56 9.74 -39.27 -0.38 -1.94 16 8 C -0.26 -5.96 5.83 -102.61 -0.60 -6.55 16 9 C 0.16 2.96 7.31 -4.98 -0.04 2.92 16 10 N -0.85 -14.11 9.61 -11.41 -0.11 -14.22 16 11 C 0.10 2.43 9.81 -16.63 -0.16 2.27 16 12 N -0.29 -7.75 2.92 -59.73 -0.17 -7.93 16 13 C -0.34 -8.91 9.93 -14.92 -0.15 -9.06 16 14 H 0.10 2.63 7.85 -52.49 -0.41 2.22 16 15 C 0.04 1.03 5.35 -17.49 -0.09 0.93 16 16 N -0.85 -22.07 10.85 55.49 0.60 -21.47 16 17 Si 0.94 19.08 29.57 -169.99 -5.03 14.05 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 23 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 24 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 25 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.34 5.58 8.98 -39.29 -0.35 5.23 16 30 H 0.33 4.35 9.08 -39.29 -0.36 3.99 16 31 H 0.17 4.26 6.34 -52.48 -0.33 3.92 16 32 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 276.15 15.07 4.16 4.16 Total: -1.00 -28.27 276.15 -8.20 -36.47 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.97 Total: 12.97 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -3.68 Total: -24.04 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.32 Total: -43.61 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.27 -8.20 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084840552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.710 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds