Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38751 * 119.82038 * 2 1 4 4 C 1.37898 * 120.64719 * 180.02562 * 3 2 1 5 5 C 1.38956 * 119.92207 * 359.97312 * 4 3 2 6 6 C 1.40694 * 119.45891 * 0.05336 * 5 4 3 7 7 C 1.37779 * 119.81375 * 180.02562 * 2 1 3 8 8 C 1.46669 * 106.08071 * 179.97438 * 6 5 4 9 9 C 1.50696 * 126.47729 * 180.26576 * 8 6 5 10 10 N 1.46903 * 109.47492 * 79.70553 * 9 8 6 11 11 C 1.34302 * 107.04456 * 359.97438 * 8 6 5 12 12 N 1.36993 * 109.93699 * 0.02562 * 11 8 6 13 13 C 1.37209 * 125.09477 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99990 * 158.96487 * 13 12 11 15 15 C 1.38853 * 119.99892 * 338.97357 * 13 12 11 16 16 N 1.31446 * 120.00101 * 349.14422 * 15 13 12 17 17 Si 1.86799 * 120.00269 * 169.15058 * 15 13 12 18 18 H 1.48497 * 109.47173 * 89.99499 * 17 15 13 19 19 H 1.48500 * 109.47291 * 209.99666 * 17 15 13 20 20 H 1.48506 * 109.46999 * 329.99415 * 17 15 13 21 21 H 1.08993 * 109.47237 * 269.97884 * 1 2 3 22 22 H 1.08997 * 109.46915 * 29.97699 * 1 2 3 23 23 H 1.08996 * 109.47009 * 149.97172 * 1 2 3 24 24 H 1.07998 * 119.67462 * 0.02590 * 3 2 1 25 25 H 1.08001 * 120.04001 * 180.02562 * 4 3 2 26 26 H 1.07992 * 120.17617 * 0.02562 * 7 2 1 27 27 H 1.08991 * 109.47205 * 199.70827 * 9 8 6 28 28 H 1.09002 * 109.46498 * 319.70242 * 9 8 6 29 29 H 1.00896 * 110.99782 * 56.04353 * 10 9 8 30 30 H 1.00899 * 110.99995 * 180.02562 * 10 9 8 31 31 H 1.08004 * 125.03064 * 180.02562 * 11 8 6 32 32 H 0.96995 * 119.99706 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2038 0.0000 4 6 3.5758 1.2237 -0.0005 5 6 4.2863 0.0295 -0.0005 6 6 3.5872 -1.1915 -0.0011 7 6 2.1920 -1.1954 -0.0005 8 6 4.6084 -2.2443 -0.0015 9 6 4.3624 -3.7310 -0.0078 10 7 4.0428 -4.1688 -1.3732 11 6 5.8042 -1.6329 -0.0018 12 7 5.6338 -0.2736 -0.0010 13 6 6.6496 0.6488 -0.0015 14 1 6.4622 1.6583 -0.3365 15 6 7.9185 0.2843 0.4286 16 7 8.1017 -0.8686 1.0328 17 14 9.3652 1.4324 0.1488 18 1 9.5043 2.3458 1.3113 19 1 10.6080 0.6343 -0.0051 20 1 9.1334 2.2298 -1.0824 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5143 24 1 1.6488 2.1343 0.0004 25 1 4.1029 2.1663 -0.0001 26 1 1.6519 -2.1306 -0.0014 27 1 5.2563 -4.2487 0.3398 28 1 3.5276 -3.9639 0.6532 29 1 4.7737 -3.9064 -2.0174 30 1 3.8731 -5.1629 -1.4038 31 1 6.7588 -2.1380 -0.0025 32 1 8.9881 -1.1230 1.3335 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084840552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 28.629387 kcal Electronic energy + Delta-G solvation = -15523.219822 eV Core-core repulsion = 13061.630514 eV Total energy + Delta-G solvation = -2461.589308 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.81955 -38.15210 -36.04000 -34.71519 -32.45716 -31.89136 -29.73383 -27.76307 -26.50663 -24.67957 -23.15489 -21.61983 -20.35236 -19.38025 -17.46062 -16.89095 -16.55041 -16.07849 -15.71136 -15.30677 -14.92098 -14.77340 -14.55448 -14.07244 -13.92320 -13.59278 -13.17260 -12.98079 -12.86145 -12.72431 -12.38018 -12.16994 -12.02528 -11.76354 -11.38389 -10.97509 -10.20377 -9.46230 -8.72889 -8.68173 -8.32133 -6.22723 0.53457 0.98702 1.33498 1.38404 1.48895 2.08089 2.18156 2.88428 3.06370 3.31359 4.02790 4.12737 4.25153 4.31014 4.48262 4.62219 4.69327 4.85406 4.89859 4.91678 5.02530 5.07413 5.15274 5.37117 5.41294 5.44566 5.52251 5.78944 5.84547 6.04710 6.30078 6.39614 6.49245 6.57943 6.80334 7.15017 7.57051 8.41784 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.009149 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.241235 B = 3059.871689 C = 4043.953358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.140 4.140 3 C -0.122 4.122 4 C -0.134 4.134 5 C 0.013 3.987 6 C -0.116 4.116 7 C -0.083 4.083 8 C -0.251 4.251 9 C 0.162 3.838 10 N -0.846 5.846 11 C 0.065 3.935 12 N -0.314 5.314 13 C -0.373 4.373 14 H 0.102 0.898 15 C 0.000 4.000 16 N -0.884 5.884 17 Si 1.010 2.990 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.260 1.260 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.142 0.858 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.338 0.662 30 H 0.347 0.653 31 H 0.154 0.846 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 -1.191 -2.040 6.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.097 4.097 6 C -0.122 4.122 7 C -0.102 4.102 8 C -0.259 4.259 9 C 0.032 3.968 10 N -0.377 5.377 11 C -0.071 4.071 12 N 0.022 4.978 13 C -0.500 4.500 14 H 0.120 0.880 15 C -0.204 4.204 16 N -0.517 5.517 17 Si 0.831 3.169 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.184 1.184 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.159 0.841 25 H 0.124 0.876 26 H 0.139 0.861 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.548 -0.605 -1.865 6.835 hybrid contribution 2.099 -0.120 0.213 2.113 sum -4.449 -0.724 -1.652 4.801 Atomic orbital electron populations 1.20613 0.88942 1.02978 1.02348 1.19858 0.97233 0.92079 1.04978 1.20766 0.91805 0.98402 1.03213 1.20116 0.94632 0.94469 1.06239 1.18975 0.84392 0.96452 1.09883 1.19164 0.93681 0.91834 1.07517 1.20390 0.91037 0.97845 1.00884 1.20127 0.90650 0.94724 1.20364 1.19629 0.98214 0.88648 0.90347 1.58699 1.51157 1.20575 1.07271 1.21882 0.98600 0.82985 1.03592 1.40319 1.03033 1.05240 1.49222 1.20130 0.89061 0.94800 1.45984 0.88021 1.26467 1.01726 0.99134 0.93111 1.69994 1.25095 1.22961 1.33699 0.84694 0.75556 0.77296 0.79388 1.19104 1.19190 1.18362 0.91079 0.90749 0.91418 0.84055 0.87613 0.86063 0.95661 0.91084 0.84994 0.83944 0.82885 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 10.00 71.24 0.71 -1.63 16 2 C -0.14 -5.05 5.88 -19.85 -0.12 -5.17 16 3 C -0.12 -4.61 9.67 22.31 0.22 -4.39 16 4 C -0.13 -6.11 9.95 22.36 0.22 -5.88 16 5 C 0.01 0.68 6.75 38.93 0.26 0.94 16 6 C -0.12 -5.64 6.35 -20.17 -0.13 -5.77 16 7 C -0.08 -3.41 9.74 22.47 0.22 -3.19 16 8 C -0.25 -11.93 5.83 -18.56 -0.11 -12.04 16 9 C 0.16 6.06 7.31 85.56 0.63 6.69 16 10 N -0.85 -27.18 9.61 -190.01 -1.83 -29.01 16 11 C 0.06 3.44 9.81 82.99 0.81 4.25 16 12 N -0.31 -17.52 2.92 -342.90 -1.00 -18.52 16 13 C -0.37 -20.55 9.93 84.00 0.83 -19.72 16 14 H 0.10 5.39 7.85 -2.91 -0.02 5.37 16 15 C 0.00 0.00 5.35 84.90 0.45 0.46 16 16 N -0.88 -47.32 10.85 21.65 0.23 -47.09 16 17 Si 1.01 39.73 29.57 68.60 2.03 41.76 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 23 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 24 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 25 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 26 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.34 11.02 8.98 -89.70 -0.81 10.21 16 30 H 0.35 8.60 9.08 -89.69 -0.81 7.79 16 31 H 0.15 8.33 6.34 -2.91 -0.02 8.31 16 32 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -63.05 276.15 2.97 -60.08 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.48 Total: 38.24 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 4.01 Total: -45.46 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -2.59 Total: -94.62 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -63.05 2.97 -60.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084840552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.710 kcal (2) G-P(sol) polarization free energy of solvation -63.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds