Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37810 * 120.17540 * 2 1 4 4 C 1.38709 * 120.36839 * 179.73080 * 3 2 1 5 5 C 1.37941 * 120.64306 * 0.56351 * 4 3 2 6 6 C 1.38918 * 119.92172 * 359.71645 * 5 4 3 7 7 C 1.39480 * 120.17020 * 180.27336 * 2 1 3 8 8 C 1.46672 * 133.97220 * 359.97438 * 7 2 1 9 9 C 1.50691 * 126.47388 * 359.97438 * 8 7 2 10 10 N 1.46902 * 109.47527 * 79.99715 * 9 8 7 11 11 C 1.34302 * 107.05074 * 179.97438 * 8 7 2 12 12 N 1.37005 * 109.93764 * 0.02562 * 11 8 7 13 13 C 1.37213 * 125.08916 * 180.02562 * 12 11 8 14 14 H 1.07999 * 120.00291 * 201.03037 * 13 12 11 15 15 C 1.38853 * 119.99691 * 21.03977 * 13 12 11 16 16 N 1.31443 * 120.00448 * 10.75855 * 15 13 12 17 17 Si 1.86806 * 119.99748 * 190.76621 * 15 13 12 18 18 H 1.48497 * 109.47295 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47110 * 119.99747 * 17 15 13 20 20 H 1.48499 * 109.46950 * 239.99457 * 17 15 13 21 21 H 1.08996 * 109.47510 * 269.72603 * 1 2 3 22 22 H 1.09006 * 109.47102 * 149.72154 * 1 2 3 23 23 H 1.09002 * 109.46756 * 29.72915 * 1 2 3 24 24 H 1.08004 * 119.82008 * 359.97438 * 3 2 1 25 25 H 1.07994 * 119.68241 * 180.27468 * 4 3 2 26 26 H 1.07997 * 120.04384 * 179.72961 * 5 4 3 27 27 H 1.09006 * 109.47102 * 199.99980 * 9 8 7 28 28 H 1.09003 * 109.47077 * 319.99473 * 9 8 7 29 29 H 1.00899 * 110.99980 * 179.97438 * 10 9 8 30 30 H 1.00896 * 111.00003 * 303.95161 * 10 9 8 31 31 H 1.07999 * 125.03102 * 179.97438 * 11 8 7 32 32 H 0.96992 * 120.00104 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1914 0.0000 4 6 3.5868 1.1960 0.0056 5 6 4.2939 0.0117 -0.0004 6 6 3.6153 -1.2005 -0.0062 7 6 2.2080 -1.2058 -0.0058 8 6 1.8072 -2.6167 -0.0120 9 6 0.3968 -3.1473 -0.0133 10 7 -0.1474 -3.0883 -1.3766 11 6 2.9347 -3.3464 -0.0163 12 7 4.0267 -2.5189 -0.0128 13 6 5.3334 -2.9374 -0.0162 14 1 6.1142 -2.2725 0.3224 15 6 5.6519 -4.2157 -0.4551 16 7 4.7441 -4.9475 -1.0617 17 14 7.3705 -4.8953 -0.1832 18 1 8.1990 -3.8811 0.5168 19 1 7.2910 -6.1263 0.6435 20 1 7.9880 -5.2187 -1.4945 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 -0.8875 -0.5182 23 1 -0.3633 0.8924 -0.5096 24 1 1.6596 2.1267 -0.0004 25 1 4.1183 2.1361 0.0101 26 1 5.3737 0.0266 -0.0003 27 1 0.3970 -4.1808 0.3333 28 1 -0.2199 -2.5416 0.6507 29 1 -1.0930 -3.4393 -1.4039 30 1 -0.0989 -2.1502 -1.7449 31 1 2.9747 -4.4256 -0.0210 32 1 4.9665 -5.8406 -1.3679 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084842577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = 49.957806 kcal Electronic energy + Delta-G solvation = -15765.973807 eV Core-core repulsion = 13305.309369 eV Total energy + Delta-G solvation = -2460.664438 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11352 -36.34913 -34.63453 -32.91346 -31.54743 -29.57649 -27.98368 -25.87334 -25.31352 -23.14111 -20.92263 -20.51953 -18.65903 -17.10211 -15.91311 -15.21915 -14.92050 -14.46125 -14.33937 -13.97906 -13.40164 -13.19637 -12.63014 -12.58830 -12.34131 -11.75130 -11.64494 -11.41425 -11.23997 -11.14617 -10.74670 -10.56805 -10.42168 -10.16622 -9.70563 -9.17579 -8.38071 -8.03467 -7.07192 -6.81082 -6.46601 -4.26859 2.17280 2.66201 3.00864 3.04388 3.09818 3.81152 3.99640 4.69188 4.85529 5.06540 5.41764 5.63084 5.70667 5.89415 5.98833 6.00615 6.07839 6.15567 6.27637 6.41232 6.44006 6.63137 6.95044 6.97928 7.12623 7.16831 7.25060 7.50567 7.60679 7.67517 7.79477 7.97595 8.09397 8.21826 8.49389 9.02322 9.45435 10.31150 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027518 B = 0.009603 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.255661 B = 2915.102001 C = 3820.756419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.059 4.059 3 C -0.171 4.171 4 C -0.137 4.137 5 C -0.111 4.111 6 C 0.055 3.945 7 C -0.102 4.102 8 C -0.253 4.253 9 C 0.156 3.844 10 N -0.845 5.845 11 C 0.108 3.892 12 N -0.290 5.290 13 C -0.341 4.341 14 H 0.105 0.895 15 C 0.042 3.958 16 N -0.848 5.848 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.275 1.275 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.325 0.675 30 H 0.337 0.663 31 H 0.170 0.830 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 4.013 1.946 6.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.157 4.157 5 C -0.131 4.131 6 C -0.056 4.056 7 C -0.108 4.108 8 C -0.260 4.260 9 C 0.026 3.974 10 N -0.376 5.376 11 C -0.028 4.028 12 N 0.047 4.953 13 C -0.469 4.469 14 H 0.123 0.877 15 C -0.167 4.167 16 N -0.480 5.480 17 Si 0.763 3.237 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.201 1.201 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.136 0.864 30 H 0.152 0.848 31 H 0.187 0.813 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.852 3.139 1.656 5.238 hybrid contribution 0.264 0.263 0.337 0.503 sum -3.588 3.402 1.993 5.331 Atomic orbital electron populations 1.20757 0.93119 1.01363 1.01036 1.19016 0.94081 0.91670 1.01198 1.20339 0.93890 0.95946 1.08886 1.20387 0.93881 0.96009 1.05428 1.19862 0.98328 0.90101 1.04843 1.18345 0.93100 0.85925 1.08262 1.18693 0.91953 0.92282 1.07914 1.19618 0.93530 0.90515 1.22339 1.19731 0.91280 0.98575 0.87851 1.58877 1.25241 1.29509 1.24002 1.21881 0.83763 0.97100 1.00072 1.40187 1.05442 1.02009 1.47619 1.19857 0.82547 0.99973 1.44496 0.87734 1.25500 1.00647 0.96534 0.94009 1.69915 1.34677 1.10938 1.32452 0.85682 0.80278 0.79152 0.78574 1.18866 1.19907 1.20080 0.92406 0.92168 0.92752 0.87996 0.87641 0.87724 0.91814 0.96336 0.86405 0.84832 0.81291 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.26 36.00 0.33 -1.36 16 2 C -0.06 -1.20 5.91 -104.32 -0.62 -1.81 16 3 C -0.17 -3.26 9.69 -39.56 -0.38 -3.64 16 4 C -0.14 -2.69 10.02 -39.52 -0.40 -3.08 16 5 C -0.11 -2.49 9.95 -39.44 -0.39 -2.88 16 6 C 0.05 1.38 6.75 -83.84 -0.57 0.81 16 7 C -0.10 -2.40 6.14 -105.09 -0.65 -3.05 16 8 C -0.25 -5.87 5.83 -102.61 -0.60 -6.47 16 9 C 0.16 2.93 6.24 -4.98 -0.03 2.90 16 10 N -0.85 -14.61 9.45 -11.41 -0.11 -14.71 16 11 C 0.11 2.78 9.81 -16.63 -0.16 2.62 16 12 N -0.29 -7.76 2.92 -59.73 -0.17 -7.93 16 13 C -0.34 -9.04 9.93 -14.92 -0.15 -9.19 16 14 H 0.10 2.65 7.85 -52.49 -0.41 2.24 16 15 C 0.04 1.05 5.35 -17.49 -0.09 0.96 16 16 N -0.85 -22.28 10.84 55.49 0.60 -21.68 16 17 Si 0.94 19.25 29.57 -169.99 -5.03 14.22 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.94 4.07 -51.93 -0.21 0.73 16 23 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 24 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 25 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.02 0.32 6.97 -51.93 -0.36 -0.04 16 29 H 0.32 4.48 9.08 -39.29 -0.36 4.12 16 30 H 0.34 5.81 7.11 -39.29 -0.28 5.53 16 31 H 0.17 4.45 6.34 -52.49 -0.33 4.12 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 267.22 15.07 4.03 4.03 Total: -1.00 -28.56 267.22 -8.00 -36.57 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.62 Total: 13.72 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.70 Total: -24.21 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.32 Total: -44.33 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.56 -8.00 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084842577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.523 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds