Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37810 * 120.17540 * 2 1 4 4 C 1.38709 * 120.36839 * 179.73080 * 3 2 1 5 5 C 1.37941 * 120.64306 * 0.56351 * 4 3 2 6 6 C 1.38918 * 119.92172 * 359.71645 * 5 4 3 7 7 C 1.39480 * 120.17020 * 180.27336 * 2 1 3 8 8 C 1.46672 * 133.97220 * 359.97438 * 7 2 1 9 9 C 1.50691 * 126.47388 * 359.97438 * 8 7 2 10 10 N 1.46902 * 109.47527 * 79.99715 * 9 8 7 11 11 C 1.34302 * 107.05074 * 179.97438 * 8 7 2 12 12 N 1.37005 * 109.93764 * 0.02562 * 11 8 7 13 13 C 1.37213 * 125.08916 * 180.02562 * 12 11 8 14 14 H 1.07999 * 120.00291 * 201.03037 * 13 12 11 15 15 C 1.38853 * 119.99691 * 21.03977 * 13 12 11 16 16 N 1.31443 * 120.00448 * 10.75855 * 15 13 12 17 17 Si 1.86806 * 119.99748 * 190.76621 * 15 13 12 18 18 H 1.48497 * 109.47295 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47110 * 119.99747 * 17 15 13 20 20 H 1.48499 * 109.46950 * 239.99457 * 17 15 13 21 21 H 1.08996 * 109.47510 * 269.72603 * 1 2 3 22 22 H 1.09006 * 109.47102 * 149.72154 * 1 2 3 23 23 H 1.09002 * 109.46756 * 29.72915 * 1 2 3 24 24 H 1.08004 * 119.82008 * 359.97438 * 3 2 1 25 25 H 1.07994 * 119.68241 * 180.27468 * 4 3 2 26 26 H 1.07997 * 120.04384 * 179.72961 * 5 4 3 27 27 H 1.09006 * 109.47102 * 199.99980 * 9 8 7 28 28 H 1.09003 * 109.47077 * 319.99473 * 9 8 7 29 29 H 1.00899 * 110.99980 * 179.97438 * 10 9 8 30 30 H 1.00896 * 111.00003 * 303.95161 * 10 9 8 31 31 H 1.07999 * 125.03102 * 179.97438 * 11 8 7 32 32 H 0.96992 * 120.00104 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1914 0.0000 4 6 3.5868 1.1960 0.0056 5 6 4.2939 0.0117 -0.0004 6 6 3.6153 -1.2005 -0.0062 7 6 2.2080 -1.2058 -0.0058 8 6 1.8072 -2.6167 -0.0120 9 6 0.3968 -3.1473 -0.0133 10 7 -0.1474 -3.0883 -1.3766 11 6 2.9347 -3.3464 -0.0163 12 7 4.0267 -2.5189 -0.0128 13 6 5.3334 -2.9374 -0.0162 14 1 6.1142 -2.2725 0.3224 15 6 5.6519 -4.2157 -0.4551 16 7 4.7441 -4.9475 -1.0617 17 14 7.3705 -4.8953 -0.1832 18 1 8.1990 -3.8811 0.5168 19 1 7.2910 -6.1263 0.6435 20 1 7.9880 -5.2187 -1.4945 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 -0.8875 -0.5182 23 1 -0.3633 0.8924 -0.5096 24 1 1.6596 2.1267 -0.0004 25 1 4.1183 2.1361 0.0101 26 1 5.3737 0.0266 -0.0003 27 1 0.3970 -4.1808 0.3333 28 1 -0.2199 -2.5416 0.6507 29 1 -1.0930 -3.4393 -1.4039 30 1 -0.0989 -2.1502 -1.7449 31 1 2.9747 -4.4256 -0.0210 32 1 4.9665 -5.8406 -1.3679 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084842577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = 32.717446 kcal Electronic energy + Delta-G solvation = -15766.721405 eV Core-core repulsion = 13305.309369 eV Total energy + Delta-G solvation = -2461.412036 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86198 -38.01015 -36.19768 -34.73915 -33.06226 -31.32355 -29.66740 -27.39631 -27.06116 -24.79850 -22.58632 -22.22540 -20.42932 -18.87766 -17.62903 -16.85034 -16.63462 -16.06765 -15.93127 -15.55334 -15.03124 -14.74106 -14.23783 -14.07174 -13.89155 -13.47173 -13.28456 -12.95240 -12.89100 -12.73292 -12.42393 -12.16307 -12.02954 -11.79514 -11.32959 -11.01156 -10.08044 -9.42118 -8.82622 -8.67890 -8.24916 -6.22555 0.50335 1.00714 1.33572 1.38362 1.50086 2.08212 2.19626 2.89694 3.07643 3.30027 4.04665 4.11411 4.29054 4.31998 4.43276 4.59345 4.61679 4.79401 4.83788 4.90236 4.99680 5.06229 5.12913 5.30695 5.38847 5.46643 5.54543 5.83726 5.86438 6.01456 6.33522 6.37904 6.50818 6.60076 6.83283 7.16589 7.57811 8.43656 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027518 B = 0.009603 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.255661 B = 2915.102001 C = 3820.756419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.061 4.061 3 C -0.171 4.171 4 C -0.120 4.120 5 C -0.145 4.145 6 C 0.019 3.981 7 C -0.128 4.128 8 C -0.244 4.244 9 C 0.161 3.839 10 N -0.853 5.853 11 C 0.068 3.932 12 N -0.315 5.315 13 C -0.374 4.374 14 H 0.102 0.898 15 C -0.001 4.001 16 N -0.881 5.881 17 Si 1.011 2.989 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.270 1.270 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.347 0.653 30 H 0.339 0.661 31 H 0.151 0.849 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 5.843 2.080 8.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.061 4.061 3 C -0.190 4.190 4 C -0.139 4.139 5 C -0.166 4.166 6 C -0.092 4.092 7 C -0.134 4.134 8 C -0.251 4.251 9 C 0.031 3.969 10 N -0.386 5.386 11 C -0.067 4.067 12 N 0.021 4.979 13 C -0.501 4.501 14 H 0.119 0.881 15 C -0.206 4.206 16 N -0.514 5.514 17 Si 0.832 3.168 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.195 1.195 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.162 0.838 25 H 0.160 0.840 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.088 4.976 1.790 7.339 hybrid contribution 0.517 -0.129 0.291 0.607 sum -4.572 4.847 2.081 6.981 Atomic orbital electron populations 1.20823 0.89864 1.02964 1.02426 1.19568 0.96581 0.90736 0.99226 1.20871 0.93814 0.97256 1.07041 1.20882 0.94645 0.96257 1.02138 1.20109 0.98660 0.90525 1.07290 1.18995 0.94742 0.86174 1.09260 1.19080 0.91637 0.93498 1.09159 1.20109 0.94713 0.90548 1.19741 1.19702 0.89277 0.98775 0.89176 1.58716 1.27024 1.29875 1.23015 1.21867 0.84963 0.96710 1.03143 1.40356 1.05500 1.02843 1.49179 1.20149 0.83108 1.00990 1.45877 0.88063 1.26502 1.04793 0.96199 0.93117 1.70031 1.36709 1.11340 1.33327 0.84629 0.75116 0.78464 0.78622 1.18181 1.19039 1.19517 0.90909 0.92023 0.89807 0.83799 0.83967 0.87978 0.91802 0.94108 0.83881 0.84601 0.83162 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 9.26 71.24 0.66 -2.25 16 2 C -0.06 -2.29 5.91 -19.67 -0.12 -2.41 16 3 C -0.17 -5.85 9.69 22.28 0.22 -5.63 16 4 C -0.12 -4.39 10.02 22.31 0.22 -4.17 16 5 C -0.15 -6.58 9.95 22.36 0.22 -6.36 16 6 C 0.02 0.98 6.75 38.93 0.26 1.24 16 7 C -0.13 -5.99 6.14 -20.17 -0.12 -6.11 16 8 C -0.24 -11.50 5.83 -18.56 -0.11 -11.60 16 9 C 0.16 5.91 6.24 85.55 0.53 6.44 16 10 N -0.85 -28.19 9.45 -190.01 -1.80 -29.98 16 11 C 0.07 3.69 9.81 82.99 0.81 4.51 16 12 N -0.31 -17.74 2.92 -342.89 -1.00 -18.74 16 13 C -0.37 -20.93 9.93 84.00 0.83 -20.10 16 14 H 0.10 5.45 7.85 -2.91 -0.02 5.43 16 15 C 0.00 -0.08 5.35 84.90 0.45 0.38 16 16 N -0.88 -48.51 10.84 21.65 0.23 -48.27 16 17 Si 1.01 40.55 29.57 68.60 2.03 42.58 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.06 1.71 4.07 -2.38 -0.01 1.70 16 23 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 24 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 25 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 26 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.04 1.32 6.97 -2.39 -0.02 1.30 16 29 H 0.35 8.79 9.08 -89.69 -0.81 7.98 16 30 H 0.34 11.04 7.11 -89.70 -0.64 10.40 16 31 H 0.15 8.50 6.34 -2.91 -0.02 8.48 16 32 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -64.99 267.22 3.04 -61.94 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.30 Total: 38.53 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 3.87 Total: -46.06 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -2.56 Total: -97.00 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -64.99 3.04 -61.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084842577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.662 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds