Wall clock time and date at job start Mon Mar 30 2020 03:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36830 * 125.03612 * 2 1 4 4 H 0.96996 * 125.06381 * 359.94569 * 3 2 1 5 5 C 1.37687 * 109.87326 * 179.97438 * 3 2 1 6 6 C 1.39132 * 133.50759 * 180.02562 * 5 3 2 7 7 C 1.37748 * 119.77628 * 179.26042 * 6 5 3 8 8 C 1.38830 * 120.67006 * 0.64141 * 7 6 5 9 9 C 1.36623 * 120.52428 * 359.57683 * 8 7 6 10 10 C 1.39629 * 119.76830 * 0.02562 * 9 8 7 11 11 C 1.34242 * 125.03085 * 179.97438 * 2 1 3 12 12 C 1.50696 * 126.50572 * 359.97438 * 11 2 1 13 13 H 1.08997 * 109.47093 * 345.81541 * 12 11 2 14 14 N 1.46903 * 109.47282 * 225.81204 * 12 11 2 15 15 C 1.50703 * 109.46970 * 105.81015 * 12 11 2 16 16 H 1.08001 * 119.99786 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99666 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00489 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99749 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47158 * 270.00285 * 19 17 15 21 21 H 1.48499 * 109.46912 * 30.00104 * 19 17 15 22 22 H 1.48506 * 109.46949 * 149.99927 * 19 17 15 23 23 H 1.08997 * 109.46988 * 264.73475 * 1 2 3 24 24 H 1.09002 * 109.46765 * 24.73906 * 1 2 3 25 25 H 1.09004 * 109.47072 * 144.72981 * 1 2 3 26 26 H 1.07998 * 120.10541 * 359.97438 * 6 5 3 27 27 H 1.08007 * 119.66540 * 180.23553 * 7 6 5 28 28 H 1.07992 * 119.74024 * 179.59423 * 8 7 6 29 29 H 1.08007 * 120.11866 * 180.02562 * 9 8 7 30 30 H 1.00903 * 110.99500 * 294.18912 * 14 12 11 31 31 H 1.00894 * 110.99943 * 58.14190 * 14 12 11 32 32 H 0.97004 * 119.99951 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9624 2.0324 -0.0008 5 6 3.6215 0.7602 0.0006 6 6 4.8099 1.4836 0.0013 7 6 6.0159 0.8181 0.0172 8 6 6.0590 -0.5695 0.0192 9 6 4.9042 -1.2996 0.0141 10 6 3.6705 -0.6457 0.0063 11 6 2.2776 -1.0992 0.0005 12 6 1.8003 -2.5286 0.0017 13 1 0.7403 -2.5575 0.2539 14 7 2.5613 -3.2982 0.9951 15 6 2.0079 -3.1286 -1.3651 16 1 2.4424 -2.5344 -2.1553 17 6 1.6432 -4.4361 -1.6065 18 7 1.1136 -5.1596 -0.6444 19 14 1.8998 -5.1797 -3.3009 20 1 0.6901 -4.9498 -4.1308 21 1 3.0734 -4.5411 -3.9491 22 1 2.1402 -6.6393 -3.1697 23 1 -0.3633 -0.0943 1.0233 24 1 -0.3633 0.9334 -0.4301 25 1 -0.3633 -0.8391 -0.5934 26 1 4.7868 2.5634 0.0010 27 1 6.9373 1.3815 0.0216 28 1 7.0128 -1.0758 0.0251 29 1 4.9454 -2.3789 0.0161 30 1 3.5331 -3.3663 0.7325 31 1 2.4627 -2.8974 1.9157 32 1 0.9800 -4.7734 0.2354 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095671400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:37 Heat of formation + Delta-G solvation = 46.493819 kcal Electronic energy + Delta-G solvation = -15768.529435 eV Core-core repulsion = 13307.714787 eV Total energy + Delta-G solvation = -2460.814648 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81472 -36.66869 -34.94363 -31.74013 -30.69664 -30.21568 -28.74076 -26.49899 -25.12201 -22.13452 -21.80159 -20.74622 -18.64315 -17.27978 -16.49561 -15.73838 -14.71552 -14.55187 -14.25695 -13.72297 -13.53786 -13.34347 -12.94969 -12.57852 -12.55472 -11.93939 -11.72587 -11.38225 -11.02852 -10.95420 -10.68218 -10.64777 -10.03231 -9.96899 -9.20349 -8.46534 -8.22747 -7.68538 -7.43303 -6.88850 -6.07196 -3.89206 1.58141 2.06571 3.28684 3.51950 3.55067 3.56469 3.72087 4.38523 4.68335 5.14478 5.25345 5.38256 5.49787 5.54275 5.62625 5.87037 5.88390 5.92509 6.06070 6.20469 6.35368 6.43341 6.49539 6.60163 6.85545 7.05118 7.26914 7.32474 7.50091 7.70538 8.03091 8.13592 8.45985 8.80632 8.92293 9.18907 9.92996 11.31899 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.009309 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.548802 B = 3007.204884 C = 3517.286981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.042 3.958 3 N -0.600 5.600 4 H 0.404 0.596 5 C 0.091 3.909 6 C -0.142 4.142 7 C -0.107 4.107 8 C -0.163 4.163 9 C -0.056 4.056 10 C -0.093 4.093 11 C -0.139 4.139 12 C 0.268 3.732 13 H 0.036 0.964 14 N -0.828 5.828 15 C -0.602 4.602 16 H 0.044 0.956 17 C 0.036 3.964 18 N -0.896 5.896 19 Si 1.063 2.937 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.286 1.286 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.326 0.674 31 H 0.299 0.701 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 12.197 2.301 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 N -0.204 5.204 4 H 0.240 0.760 5 C -0.016 4.016 6 C -0.163 4.163 7 C -0.126 4.126 8 C -0.182 4.182 9 C -0.074 4.074 10 C -0.098 4.098 11 C -0.147 4.147 12 C 0.159 3.841 13 H 0.053 0.947 14 N -0.355 5.355 15 C -0.641 4.641 16 H 0.062 0.938 17 C -0.173 4.173 18 N -0.531 5.531 19 Si 0.893 3.107 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.212 1.212 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.109 0.891 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.284 10.258 1.241 10.842 hybrid contribution 0.729 2.977 0.870 3.186 sum 4.012 13.235 2.111 13.990 Atomic orbital electron populations 1.20350 0.88276 1.02952 1.02499 1.20109 0.93185 0.85306 1.07719 1.41609 1.03880 1.07635 1.67311 0.76032 1.18249 0.84555 0.94514 1.04320 1.19860 0.89954 0.98203 1.08259 1.20645 0.96201 0.94421 1.01354 1.20538 0.97793 0.93830 1.06080 1.20449 0.90551 0.99896 0.96525 1.19182 0.93812 0.91439 1.05391 1.21924 0.89874 0.97804 1.05133 1.17755 0.92935 0.81042 0.92413 0.94674 1.59562 1.15763 1.56780 1.03435 1.21738 1.47981 0.99749 0.94617 0.93778 1.25569 0.93686 0.93882 1.04202 1.70519 1.38152 1.39523 1.04877 0.83659 0.76071 0.75986 0.75017 1.21808 1.21781 1.21203 0.91440 0.92523 0.89170 0.87178 0.86564 0.86625 0.85836 0.86084 0.89098 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.83 36.01 0.35 -0.95 16 2 C 0.04 0.79 7.08 -81.77 -0.58 0.21 16 3 N -0.60 -9.88 6.07 -6.95 -0.04 -9.92 16 4 H 0.40 5.10 8.96 -40.82 -0.37 4.74 16 5 C 0.09 1.66 7.28 -83.98 -0.61 1.04 16 6 C -0.14 -2.19 10.08 -39.43 -0.40 -2.59 16 7 C -0.11 -1.58 10.01 -39.54 -0.40 -1.98 16 8 C -0.16 -2.64 9.97 -39.95 -0.40 -3.03 16 9 C -0.06 -1.07 9.58 -39.65 -0.38 -1.45 16 10 C -0.09 -1.93 6.19 -105.13 -0.65 -2.58 16 11 C -0.14 -3.06 5.11 -102.71 -0.52 -3.58 16 12 C 0.27 6.67 2.53 -70.02 -0.18 6.49 16 13 H 0.04 0.93 7.03 -51.93 -0.36 0.57 16 14 N -0.83 -19.52 7.76 -6.65 -0.05 -19.58 16 15 C -0.60 -16.91 8.66 -34.44 -0.30 -17.21 16 16 H 0.04 1.29 7.74 -52.49 -0.41 0.89 16 17 C 0.04 1.03 5.39 -17.82 -0.10 0.93 16 18 N -0.90 -27.07 13.51 55.43 0.75 -26.32 16 19 Si 1.06 25.72 29.90 -169.99 -5.08 20.64 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 26 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.12 2.43 6.35 -52.48 -0.33 2.10 16 30 H 0.33 7.58 6.57 -39.29 -0.26 7.32 16 31 H 0.30 6.36 9.01 -39.29 -0.35 6.01 16 32 H 0.29 8.77 6.40 -40.82 -0.26 8.51 16 LS Contribution 270.36 15.07 4.07 4.07 Total: -1.00 -31.84 270.36 -8.16 -40.00 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -3.65 Total: 15.79 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -4.16 Total: -24.69 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.65 Total: -55.81 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.84 -8.16 -40.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.492 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds