Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36830 * 125.03612 * 2 1 4 4 H 0.96996 * 125.06381 * 359.94569 * 3 2 1 5 5 C 1.37687 * 109.87326 * 179.97438 * 3 2 1 6 6 C 1.39132 * 133.50759 * 180.02562 * 5 3 2 7 7 C 1.37748 * 119.77628 * 179.26042 * 6 5 3 8 8 C 1.38830 * 120.67006 * 0.64141 * 7 6 5 9 9 C 1.36623 * 120.52428 * 359.57683 * 8 7 6 10 10 C 1.39629 * 119.76830 * 0.02562 * 9 8 7 11 11 C 1.34242 * 125.03085 * 179.97438 * 2 1 3 12 12 C 1.50696 * 126.50572 * 359.97438 * 11 2 1 13 13 H 1.08997 * 109.47093 * 345.81541 * 12 11 2 14 14 N 1.46903 * 109.47282 * 225.81204 * 12 11 2 15 15 C 1.50703 * 109.46970 * 105.81015 * 12 11 2 16 16 H 1.08001 * 119.99786 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99666 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00489 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99749 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47158 * 270.00285 * 19 17 15 21 21 H 1.48499 * 109.46912 * 30.00104 * 19 17 15 22 22 H 1.48506 * 109.46949 * 149.99927 * 19 17 15 23 23 H 1.08997 * 109.46988 * 264.73475 * 1 2 3 24 24 H 1.09002 * 109.46765 * 24.73906 * 1 2 3 25 25 H 1.09004 * 109.47072 * 144.72981 * 1 2 3 26 26 H 1.07998 * 120.10541 * 359.97438 * 6 5 3 27 27 H 1.08007 * 119.66540 * 180.23553 * 7 6 5 28 28 H 1.07992 * 119.74024 * 179.59423 * 8 7 6 29 29 H 1.08007 * 120.11866 * 180.02562 * 9 8 7 30 30 H 1.00903 * 110.99500 * 294.18912 * 14 12 11 31 31 H 1.00894 * 110.99943 * 58.14190 * 14 12 11 32 32 H 0.97004 * 119.99951 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9624 2.0324 -0.0008 5 6 3.6215 0.7602 0.0006 6 6 4.8099 1.4836 0.0013 7 6 6.0159 0.8181 0.0172 8 6 6.0590 -0.5695 0.0192 9 6 4.9042 -1.2996 0.0141 10 6 3.6705 -0.6457 0.0063 11 6 2.2776 -1.0992 0.0005 12 6 1.8003 -2.5286 0.0017 13 1 0.7403 -2.5575 0.2539 14 7 2.5613 -3.2982 0.9951 15 6 2.0079 -3.1286 -1.3651 16 1 2.4424 -2.5344 -2.1553 17 6 1.6432 -4.4361 -1.6065 18 7 1.1136 -5.1596 -0.6444 19 14 1.8998 -5.1797 -3.3009 20 1 0.6901 -4.9498 -4.1308 21 1 3.0734 -4.5411 -3.9491 22 1 2.1402 -6.6393 -3.1697 23 1 -0.3633 -0.0943 1.0233 24 1 -0.3633 0.9334 -0.4301 25 1 -0.3633 -0.8391 -0.5934 26 1 4.7868 2.5634 0.0010 27 1 6.9373 1.3815 0.0216 28 1 7.0128 -1.0758 0.0251 29 1 4.9454 -2.3789 0.0161 30 1 3.5331 -3.3663 0.7325 31 1 2.4627 -2.8974 1.9157 32 1 0.9800 -4.7734 0.2354 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095671400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = 24.986623 kcal Electronic energy + Delta-G solvation = -15769.462057 eV Core-core repulsion = 13307.714787 eV Total energy + Delta-G solvation = -2461.747270 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19828 -37.98659 -36.83261 -33.61841 -32.17258 -31.68581 -30.17164 -28.02753 -27.01744 -24.02287 -23.12168 -22.12143 -20.24098 -18.94273 -18.21186 -17.14601 -16.40712 -15.96262 -15.70583 -15.59446 -15.18933 -14.77639 -14.55070 -14.17335 -13.81861 -13.39102 -13.32408 -13.12886 -12.59077 -12.47847 -12.29950 -12.23763 -11.93244 -11.58741 -10.89678 -10.44253 -10.25417 -9.31348 -9.00889 -8.44139 -8.25323 -6.16910 0.25270 0.75033 1.53815 1.62740 1.79700 1.82324 2.25450 2.65380 3.04000 3.36144 3.85410 3.95159 4.20157 4.28967 4.32047 4.42731 4.50565 4.58743 4.68190 4.69857 4.99001 5.09389 5.13305 5.14915 5.43165 5.62891 5.75321 5.87067 5.97515 6.07539 6.26086 6.34477 6.76498 6.81561 6.83603 7.13817 7.72183 9.03100 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.009309 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.548802 B = 3007.204884 C = 3517.286981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.055 3.945 3 N -0.583 5.583 4 H 0.425 0.575 5 C 0.077 3.923 6 C -0.134 4.134 7 C -0.102 4.102 8 C -0.155 4.155 9 C -0.091 4.091 10 C -0.125 4.125 11 C -0.194 4.194 12 C 0.276 3.724 13 H 0.010 0.990 14 N -0.833 5.833 15 C -0.605 4.605 16 H 0.023 0.977 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 1.108 2.892 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.140 0.860 29 H 0.101 0.899 30 H 0.326 0.674 31 H 0.311 0.689 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 14.834 1.887 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 N -0.189 5.189 4 H 0.265 0.735 5 C -0.030 4.030 6 C -0.154 4.154 7 C -0.121 4.121 8 C -0.174 4.174 9 C -0.110 4.110 10 C -0.130 4.130 11 C -0.203 4.203 12 C 0.166 3.834 13 H 0.028 0.972 14 N -0.361 5.361 15 C -0.644 4.644 16 H 0.042 0.958 17 C -0.215 4.215 18 N -0.557 5.557 19 Si 0.932 3.068 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.166 0.834 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.456 12.945 0.835 13.715 hybrid contribution 0.437 2.272 1.047 2.539 sum 4.893 15.216 1.881 16.094 Atomic orbital electron populations 1.20393 0.86326 1.03762 1.03348 1.20409 0.94439 0.85388 1.04986 1.41477 1.03200 1.08038 1.66212 0.73542 1.18570 0.85883 0.93704 1.04884 1.20351 0.88868 1.00097 1.06121 1.21152 0.97781 0.93832 0.99362 1.20897 0.97609 0.94925 1.03970 1.20471 0.91701 0.99263 0.99578 1.19384 0.93500 0.93243 1.06902 1.21625 0.91772 0.96990 1.09877 1.17351 0.91662 0.83395 0.90957 0.97182 1.59388 1.15568 1.57170 1.03948 1.21955 1.46915 0.99682 0.95831 0.95829 1.26869 0.93033 0.94722 1.06878 1.70634 1.40335 1.39839 1.04913 0.83059 0.76836 0.75329 0.71597 1.20129 1.20873 1.20954 0.89879 0.88874 0.91742 0.83378 0.82311 0.84187 0.88046 0.86117 0.87846 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.46 9.83 71.24 0.70 -1.76 16 2 C 0.06 2.06 7.08 40.87 0.29 2.35 16 3 N -0.58 -17.94 6.07 -175.90 -1.07 -19.01 16 4 H 0.43 9.28 8.96 -92.71 -0.83 8.45 16 5 C 0.08 2.65 7.28 39.03 0.28 2.93 16 6 C -0.13 -3.60 10.08 22.37 0.23 -3.38 16 7 C -0.10 -2.60 10.01 22.30 0.22 -2.38 16 8 C -0.15 -4.70 9.97 22.03 0.22 -4.48 16 9 C -0.09 -3.57 9.58 22.23 0.21 -3.35 16 10 C -0.13 -5.23 6.19 -20.20 -0.13 -5.36 16 11 C -0.19 -8.77 5.11 -18.62 -0.10 -8.87 16 12 C 0.28 14.41 2.53 43.42 0.11 14.52 16 13 H 0.01 0.58 7.03 -2.39 -0.02 0.56 16 14 N -0.83 -41.33 7.76 -174.95 -1.36 -42.69 16 15 C -0.60 -35.40 8.66 25.60 0.22 -35.18 16 16 H 0.02 1.43 7.74 -2.91 -0.02 1.41 16 17 C -0.01 -0.69 5.39 84.65 0.46 -0.24 16 18 N -0.92 -57.41 13.51 21.45 0.29 -57.12 16 19 Si 1.11 52.75 29.90 68.60 2.05 54.80 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.31 7.58 -2.38 -0.02 2.29 16 26 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 28 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 29 H 0.10 4.25 6.35 -2.91 -0.02 4.23 16 30 H 0.33 16.08 6.57 -89.69 -0.59 15.49 16 31 H 0.31 13.91 9.01 -89.70 -0.81 13.10 16 32 H 0.28 17.58 6.40 -92.71 -0.59 16.98 16 Total: -1.00 -71.65 270.36 1.75 -69.89 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.89 Total: 39.32 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 2.72 Total: -45.19 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -2.14 Total: -118.82 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -71.65 1.75 -69.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.881 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds