Wall clock time and date at job start Mon Mar 30 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36830 * 125.03181 * 2 1 4 4 H 0.96996 * 125.06455 * 0.03727 * 3 2 1 5 5 C 1.37691 * 109.87058 * 180.30002 * 3 2 1 6 6 C 1.39131 * 133.50724 * 179.71695 * 5 3 2 7 7 C 1.37743 * 119.77807 * 180.02562 * 6 5 3 8 8 C 1.38826 * 120.66902 * 359.97438 * 7 6 5 9 9 C 1.36633 * 120.52799 * 0.02562 * 8 7 6 10 10 C 1.39629 * 119.76077 * 0.02562 * 9 8 7 11 11 C 1.34236 * 125.03772 * 179.82979 * 2 1 3 12 12 C 1.50698 * 126.50001 * 359.97438 * 11 2 1 13 13 H 1.09001 * 109.47157 * 194.68723 * 12 11 2 14 14 N 1.46897 * 109.47207 * 314.68313 * 12 11 2 15 15 C 1.50703 * 109.47376 * 74.68841 * 12 11 2 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00216 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00069 * 179.97438 * 17 15 12 19 19 Si 1.86800 * 119.99806 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.46845 * 90.00621 * 19 17 15 21 21 H 1.48503 * 109.47399 * 210.00111 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00717 * 19 17 15 23 23 H 1.09000 * 109.47207 * 270.16119 * 1 2 3 24 24 H 1.08994 * 109.47409 * 30.17374 * 1 2 3 25 25 H 1.09009 * 109.46588 * 150.16695 * 1 2 3 26 26 H 1.08000 * 120.10647 * 0.04064 * 6 5 3 27 27 H 1.07997 * 119.66566 * 180.02562 * 7 6 5 28 28 H 1.08005 * 119.74054 * 180.02562 * 8 7 6 29 29 H 1.07999 * 120.11855 * 180.02562 * 9 8 7 30 30 H 1.00895 * 111.00145 * 296.04605 * 14 12 11 31 31 H 1.00902 * 111.00058 * 60.00697 * 14 12 11 32 32 H 0.97000 * 119.99667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9623 2.0324 0.0005 5 6 3.6214 0.7603 -0.0068 6 6 4.8098 1.4838 -0.0147 7 6 6.0158 0.8183 -0.0208 8 6 6.0589 -0.5693 -0.0186 9 6 4.9041 -1.2995 -0.0108 10 6 3.6705 -0.6455 -0.0057 11 6 2.2777 -1.0991 0.0033 12 6 1.8005 -2.5285 0.0081 13 1 2.6284 -3.1871 0.2704 14 7 0.7220 -2.6814 0.9937 15 6 1.2850 -2.8907 -1.3610 16 1 1.3009 -2.1587 -2.1550 17 6 0.7920 -4.1560 -1.5996 18 7 0.3417 -4.4718 -2.7942 19 14 0.7638 -5.4217 -0.2260 20 1 -0.5243 -5.3278 0.5071 21 1 0.9066 -6.7823 -0.8035 22 1 1.8864 -5.1610 0.7105 23 1 -0.3633 0.0029 1.0277 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3633 -0.8916 -0.5113 26 1 4.7867 2.5635 -0.0158 27 1 6.9372 1.3817 -0.0265 28 1 7.0129 -1.0757 -0.0230 29 1 4.9454 -2.3787 -0.0088 30 1 1.0590 -2.5068 1.9285 31 1 -0.0580 -2.0807 0.7723 32 1 -0.0047 -5.3622 -2.9621 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095685455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:38 Heat of formation + Delta-G solvation = 30.169237 kcal Electronic energy + Delta-G solvation = -15739.535500 eV Core-core repulsion = 13278.012966 eV Total energy + Delta-G solvation = -2461.522535 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.19537 -38.11185 -36.65021 -34.00859 -32.27375 -31.78510 -29.93376 -28.53095 -27.37160 -23.97219 -22.92297 -22.16310 -19.90976 -18.96590 -18.46612 -17.22475 -16.59722 -16.01274 -15.84180 -15.59050 -15.12193 -14.69943 -14.61958 -14.19829 -13.79374 -13.67590 -13.36386 -13.00765 -12.68146 -12.55569 -12.27643 -12.25400 -11.73608 -11.68380 -11.34376 -10.70233 -10.34597 -9.33822 -8.98483 -8.35731 -8.19547 -6.30537 0.27711 0.77825 1.52415 1.58748 1.73420 1.83040 2.28135 2.56357 3.06050 3.14862 3.87544 3.98310 4.23516 4.26400 4.33192 4.46059 4.51345 4.60350 4.70658 4.71719 5.04067 5.04650 5.14169 5.20244 5.37409 5.62286 5.65371 5.77298 5.90266 6.03508 6.21695 6.34171 6.54815 6.82607 6.84350 7.05436 7.45156 8.93366 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030092 B = 0.008971 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.251874 B = 3120.453373 C = 3577.525490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.072 3.928 3 N -0.584 5.584 4 H 0.425 0.575 5 C 0.079 3.921 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.152 4.152 9 C -0.097 4.097 10 C -0.134 4.134 11 C -0.196 4.196 12 C 0.261 3.739 13 H 0.026 0.974 14 N -0.845 5.845 15 C -0.500 4.500 16 H 0.025 0.975 17 C 0.025 3.975 18 N -0.950 5.950 19 Si 0.998 3.002 20 H -0.273 1.273 21 H -0.325 1.325 22 H -0.266 1.266 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.328 0.672 31 H 0.343 0.657 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 13.210 9.356 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.036 4.036 3 N -0.190 5.190 4 H 0.265 0.735 5 C -0.029 4.029 6 C -0.154 4.154 7 C -0.123 4.123 8 C -0.171 4.171 9 C -0.115 4.115 10 C -0.139 4.139 11 C -0.205 4.205 12 C 0.150 3.850 13 H 0.044 0.956 14 N -0.378 5.378 15 C -0.539 4.539 16 H 0.043 0.957 17 C -0.173 4.173 18 N -0.590 5.590 19 Si 0.828 3.172 20 H -0.198 1.198 21 H -0.256 1.256 22 H -0.191 1.191 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.165 0.835 27 H 0.176 0.824 28 H 0.160 0.840 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.155 12.457 9.022 16.567 hybrid contribution -0.199 0.389 0.095 0.447 sum 5.956 12.845 9.117 16.841 Atomic orbital electron populations 1.20608 0.86515 1.04162 1.03771 1.20243 0.94226 0.85205 1.03935 1.41513 1.03303 1.08155 1.66033 0.73540 1.18543 0.85823 0.93670 1.04839 1.20357 0.88947 1.00095 1.06002 1.21160 0.97734 0.93968 0.99393 1.20895 0.97652 0.94832 1.03690 1.20489 0.91609 0.99615 0.99820 1.19545 0.93817 0.93497 1.07068 1.21356 0.91430 0.96730 1.10963 1.17536 0.89745 0.87243 0.90434 0.95632 1.59200 1.11324 1.62259 1.05052 1.20971 1.40982 0.97339 0.94583 0.95698 1.25833 0.93319 1.00653 0.97518 1.70095 1.43692 1.21484 1.23762 0.84875 0.79748 0.74206 0.78345 1.19824 1.25552 1.19108 0.88724 0.89592 0.90729 0.83494 0.82375 0.83989 0.87564 0.85908 0.84031 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.76 8.66 71.24 0.62 -2.14 16 2 C 0.07 2.55 7.03 40.87 0.29 2.84 16 3 N -0.58 -17.44 6.07 -175.91 -1.07 -18.51 16 4 H 0.43 9.07 8.96 -92.71 -0.83 8.24 16 5 C 0.08 2.62 7.28 39.03 0.28 2.90 16 6 C -0.13 -3.47 10.08 22.37 0.23 -3.25 16 7 C -0.10 -2.52 10.01 22.29 0.22 -2.30 16 8 C -0.15 -4.34 9.97 22.03 0.22 -4.12 16 9 C -0.10 -3.58 10.05 22.23 0.22 -3.36 16 10 C -0.13 -5.40 6.35 -20.20 -0.13 -5.53 16 11 C -0.20 -8.44 5.20 -18.63 -0.10 -8.54 16 12 C 0.26 12.59 2.38 43.42 0.10 12.69 16 13 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 14 N -0.85 -35.17 6.69 -174.96 -1.17 -36.34 16 15 C -0.50 -29.17 8.60 25.60 0.22 -28.95 16 16 H 0.02 1.63 7.98 -2.91 -0.02 1.61 16 17 C 0.03 1.50 5.47 84.65 0.46 1.96 16 18 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 19 Si 1.00 50.51 26.03 68.60 1.79 52.30 16 20 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.33 -16.59 7.11 99.48 0.71 -15.88 16 22 H -0.27 -13.00 6.54 99.48 0.65 -12.35 16 23 H 0.09 2.25 7.96 -2.39 -0.02 2.23 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 2.76 6.01 -2.38 -0.01 2.75 16 26 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 30 H 0.33 11.80 9.06 -89.70 -0.81 10.98 16 31 H 0.34 13.22 5.41 -89.69 -0.49 12.73 16 32 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -73.68 265.86 1.47 -72.21 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -1.02 Total: 28.63 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 2.64 Total: -37.79 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -1.94 Total: -115.35 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 1.79 Total: 52.30 kcal Total: -73.68 1.47 -72.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095685455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.383 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds