Wall clock time and date at job start Mon Mar 30 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30110 * 124.95390 * 2 1 4 4 C 1.35787 * 109.64483 * 179.97438 * 3 2 1 5 5 C 1.39735 * 133.60090 * 179.97438 * 4 3 2 6 6 C 1.36603 * 119.88474 * 179.72469 * 5 4 3 7 7 C 1.38783 * 120.66827 * 0.28758 * 6 5 4 8 8 C 1.50702 * 119.77051 * 179.97438 * 7 6 5 9 9 C 1.37848 * 120.45026 * 0.02562 * 7 6 5 10 10 C 1.38833 * 119.69197 * 359.97438 * 9 7 6 11 11 N 1.36053 * 124.94724 * 180.62582 * 2 1 3 12 12 C 1.46503 * 126.34878 * 359.41420 * 11 2 1 13 13 C 1.50703 * 109.47017 * 270.83358 * 12 11 2 14 14 H 1.07998 * 120.00218 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99812 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99738 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47504 * 90.00170 * 17 15 13 19 19 H 1.48503 * 109.46929 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.47029 * 329.99741 * 17 15 13 21 21 H 1.08999 * 109.47089 * 90.02190 * 1 2 3 22 22 H 1.09000 * 109.47628 * 210.02535 * 1 2 3 23 23 H 1.09007 * 109.46864 * 330.02673 * 1 2 3 24 24 H 1.08002 * 120.06112 * 0.02562 * 5 4 3 25 25 H 1.07994 * 119.66831 * 180.30197 * 6 5 4 26 26 H 1.08997 * 109.47434 * 89.99688 * 8 7 6 27 27 H 1.09005 * 109.46735 * 209.99536 * 8 7 6 28 28 H 1.09001 * 109.47297 * 329.99133 * 8 7 6 29 29 H 1.08002 * 120.15281 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.46744 * 30.83013 * 12 11 2 31 31 H 1.08990 * 109.47254 * 150.83380 * 12 11 2 32 32 H 0.96997 * 119.99786 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7079 0.0006 5 6 4.7587 1.4295 0.0004 6 6 5.9532 0.7667 0.0068 7 6 5.9930 -0.6206 0.0076 8 6 7.3220 -1.3310 0.0142 9 6 4.8252 -1.3530 0.0013 10 6 3.6018 -0.6966 -0.0053 11 7 2.2863 -1.1151 -0.0122 12 6 1.8166 -2.5028 -0.0153 13 6 1.6478 -2.9792 1.4045 14 1 1.8680 -2.3146 2.2268 15 6 1.2113 -4.2631 1.6536 16 7 0.9427 -5.0722 0.6522 17 14 1.0015 -4.8533 3.4134 18 1 -0.3800 -4.5604 3.8724 19 1 1.2443 -6.3170 3.4768 20 1 1.9735 -4.1518 4.2899 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8903 0.5135 24 1 4.7393 2.5093 0.0000 25 1 6.8758 1.3278 0.0116 26 1 7.6376 -1.5018 1.0434 27 1 7.2252 -2.2875 -0.4997 28 1 8.0644 -0.7177 -0.4966 29 1 4.8617 -2.4324 0.0016 30 1 0.8598 -2.5613 -0.5343 31 1 2.5457 -3.1321 -0.5254 32 1 0.6352 -5.9753 0.8274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095922508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:46 Heat of formation + Delta-G solvation = 34.896048 kcal Electronic energy + Delta-G solvation = -15491.328640 eV Core-core repulsion = 13030.011076 eV Total energy + Delta-G solvation = -2461.317565 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.96786 -38.70395 -36.02474 -34.23914 -32.92259 -31.76113 -29.90504 -29.01683 -26.41024 -25.32039 -22.96732 -22.24312 -20.66443 -18.88561 -18.01049 -17.69623 -16.55100 -16.31654 -15.94286 -15.07216 -14.79456 -14.54251 -14.36332 -14.14693 -13.75105 -13.59037 -13.36461 -13.12218 -12.91800 -12.75093 -12.62456 -12.45604 -12.18511 -12.05873 -11.67674 -11.06083 -10.93294 -10.74766 -9.11883 -8.82742 -8.38089 -6.56957 0.08005 0.68865 1.34526 1.35585 1.46437 1.84759 2.02843 2.31227 2.91651 2.95492 3.32179 3.69514 4.06870 4.17317 4.24536 4.44461 4.53488 4.60371 4.67315 4.75028 4.82019 4.89673 4.91894 4.95348 5.07596 5.24629 5.35661 5.48071 5.66847 5.71263 5.74879 5.80463 6.09049 6.29526 6.58056 7.01773 7.15742 8.67696 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.008802 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.634581 B = 3180.305285 C = 3966.559969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.265 3.735 3 N -0.533 5.533 4 C 0.006 3.994 5 C -0.077 4.077 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.103 4.103 9 C -0.127 4.127 10 C 0.022 3.978 11 N -0.475 5.475 12 C 0.256 3.744 13 C -0.557 4.557 14 H 0.047 0.953 15 C 0.027 3.973 16 N -0.914 5.914 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.276 1.276 21 H 0.100 0.900 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.144 0.856 25 H 0.167 0.833 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.045 0.955 31 H 0.024 0.976 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 7.198 -1.070 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.001 3.999 3 N -0.255 5.255 4 C -0.113 4.113 5 C -0.097 4.097 6 C -0.142 4.142 7 C -0.081 4.081 8 C -0.160 4.160 9 C -0.148 4.148 10 C -0.089 4.089 11 N -0.161 5.161 12 C 0.136 3.864 13 C -0.594 4.594 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.552 5.552 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.201 1.201 21 H 0.118 0.882 22 H 0.097 0.903 23 H 0.125 0.875 24 H 0.161 0.839 25 H 0.184 0.816 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.575 7.663 -1.145 10.162 hybrid contribution -0.255 -1.615 0.714 1.784 sum 6.320 6.048 -0.431 8.758 Atomic orbital electron populations 1.20426 0.82549 1.04970 1.04824 1.24234 0.97288 0.80748 0.97675 1.70313 1.01236 1.27969 1.26003 1.19626 0.93080 0.90747 1.07858 1.20239 0.88764 1.00224 1.00470 1.20855 0.98038 0.93232 1.02037 1.20007 0.94740 0.94249 0.99082 1.20782 0.91887 1.00138 1.03162 1.20062 0.89580 0.99237 1.05896 1.19404 0.86567 0.95731 1.07216 1.45952 1.04605 1.09066 1.56522 1.19273 0.95436 0.73867 0.97795 1.21384 1.47630 0.98822 0.91609 0.93464 1.25695 0.93801 0.95924 1.02041 1.69993 1.44347 1.07975 1.32913 0.85407 0.79021 0.77684 0.78749 1.19014 1.19768 1.20065 0.88192 0.90331 0.87507 0.83856 0.81593 0.90323 0.91850 0.88790 0.87425 0.93674 0.95836 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 9.95 71.23 0.71 -1.65 16 2 C 0.27 11.61 7.85 137.92 1.08 12.69 16 3 N -0.53 -23.59 11.27 -179.96 -2.03 -25.62 16 4 C 0.01 0.27 7.23 39.45 0.29 0.55 16 5 C -0.08 -2.61 10.05 22.25 0.22 -2.38 16 6 C -0.12 -3.42 9.61 22.02 0.21 -3.21 16 7 C -0.08 -2.46 5.88 -19.83 -0.12 -2.57 16 8 C -0.10 -2.27 10.00 71.24 0.71 -1.56 16 9 C -0.13 -5.14 9.69 22.32 0.22 -4.92 16 10 C 0.02 1.00 6.87 38.86 0.27 1.26 16 11 N -0.47 -22.82 2.79 -509.63 -1.42 -24.24 16 12 C 0.26 13.23 5.48 85.63 0.47 13.70 16 13 C -0.56 -30.55 9.39 25.60 0.24 -30.31 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.03 1.45 5.46 84.66 0.46 1.91 16 16 N -0.91 -50.59 13.29 21.45 0.28 -50.30 16 17 Si 0.97 42.27 29.54 68.60 2.03 44.29 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 22 H 0.08 2.83 7.68 -2.39 -0.02 2.82 16 23 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 24 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 25 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.41 8.08 -2.38 -0.02 1.39 16 28 H 0.09 1.51 8.08 -2.39 -0.02 1.50 16 29 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.05 2.34 7.65 -2.39 -0.02 2.32 16 31 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -65.17 280.02 4.73 -60.45 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.10 Total: 11.91 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.76 Total: -16.50 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.17 Total: -100.16 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -65.17 4.73 -60.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095922508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.342 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds