Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.37964 * 119.92317 * 265.00223 * 3 2 1 5 5 C 1.39614 * 119.84869 * 180.02562 * 4 3 2 6 6 C 1.43197 * 120.15325 * 179.97438 * 5 4 3 7 7 N 5.95834 * 108.68710 * 322.96349 * 2 1 3 8 8 C 1.39655 * 119.69589 * 359.97438 * 5 4 3 9 9 C 1.37924 * 119.84449 * 0.02562 * 8 5 4 10 10 C 1.38331 * 119.92530 * 84.72848 * 3 2 1 11 11 C 1.50705 * 119.84922 * 0.02562 * 10 3 2 12 12 H 1.09004 * 109.46488 * 324.99598 * 11 10 3 13 13 N 1.46904 * 109.47386 * 205.00114 * 11 10 3 14 14 C 1.50693 * 109.47272 * 84.99761 * 11 10 3 15 15 H 1.07997 * 120.00099 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00023 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99911 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00049 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46962 * 90.00393 * 18 16 14 20 20 H 1.48497 * 109.47224 * 209.99793 * 18 16 14 21 21 H 1.48498 * 109.47310 * 330.00002 * 18 16 14 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.08006 * 120.08048 * 359.97438 * 4 3 2 28 28 H 1.07993 * 120.07716 * 180.02562 * 8 5 4 29 29 H 1.08000 * 119.92276 * 180.02562 * 9 8 5 30 30 H 1.00899 * 110.99863 * 176.04095 * 13 11 10 31 31 H 1.00900 * 110.99442 * 299.99871 * 13 11 10 32 32 H 0.97003 * 120.00049 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3599 2.0350 -1.1912 5 6 2.8256 3.3512 -1.1893 6 6 3.1680 3.9948 -2.4218 7 7 3.4391 4.5055 -3.3997 8 6 2.9559 4.0372 0.0201 9 6 2.6248 3.4111 1.2036 10 6 2.1585 2.1082 1.1938 11 6 1.7933 1.4326 2.4905 12 1 0.9462 0.7664 2.3271 13 7 1.4316 2.4491 3.4875 14 6 2.9704 0.6354 2.9904 15 1 3.8909 0.6197 2.4258 16 6 2.8720 -0.0742 4.1685 17 7 1.7509 -0.0556 4.8557 18 14 4.3308 -1.0631 4.7878 19 1 5.1728 -0.2081 5.6627 20 1 3.8432 -2.2335 5.5607 21 1 5.1362 -1.5337 3.6323 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2571 1.4986 -2.1230 28 1 3.3151 5.0556 0.0287 29 1 2.7247 3.9406 2.1395 30 1 1.1208 2.0193 4.3458 31 1 2.2010 3.0796 3.6566 32 1 1.6818 -0.5545 5.6847 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104500031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = 34.558556 kcal Electronic energy + Delta-G solvation = -15423.191611 eV Core-core repulsion = 12961.859412 eV Total energy + Delta-G solvation = -2461.332200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.39368 -36.48174 -34.70668 -33.61224 -31.79654 -29.64653 -28.98120 -26.26620 -23.99252 -23.30483 -20.92417 -20.48540 -17.72875 -16.64382 -15.78902 -15.31219 -14.46065 -14.32008 -13.80379 -13.53845 -13.39390 -13.10466 -12.93738 -12.47089 -12.39784 -12.18252 -11.80564 -11.42061 -11.32316 -11.07696 -10.97005 -10.81433 -10.45150 -10.23196 -10.07015 -9.62543 -8.77732 -8.38153 -8.02479 -7.31857 -6.20286 -4.37461 1.29806 1.83977 2.89484 3.15763 3.24339 3.26633 3.34818 4.20967 4.22753 4.37559 5.01975 5.21125 5.26894 5.54348 5.65248 5.75431 5.92606 5.96956 6.05177 6.28381 6.38365 6.43642 6.47021 6.60214 6.74521 6.86669 6.93256 7.12220 7.38209 7.61680 7.63858 7.73136 7.95620 8.54569 8.81078 8.98884 9.34772 10.77059 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.007491 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.105182 B = 3737.142258 C = 3933.673769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.086 4.086 4 C -0.071 4.071 5 C -0.069 4.069 6 C 0.272 3.728 7 N -0.451 5.451 8 C -0.077 4.077 9 C -0.115 4.115 10 C 0.010 3.990 11 C 0.232 3.768 12 H 0.062 0.938 13 N -0.852 5.852 14 C -0.544 4.544 15 H 0.057 0.943 16 C 0.069 3.931 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.357 0.643 31 H 0.312 0.688 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 1.609 -4.969 5.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.092 4.092 5 C -0.072 4.072 6 C -0.042 4.042 7 N -0.128 5.128 8 C -0.097 4.097 9 C -0.133 4.133 10 C 0.008 3.992 11 C 0.122 3.878 12 H 0.080 0.920 13 N -0.383 5.383 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.174 0.826 31 H 0.122 0.878 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.834 2.537 -6.844 7.347 hybrid contribution 1.572 -1.170 1.349 2.379 sum 0.738 1.367 -5.495 5.711 Atomic orbital electron populations 1.21730 0.95259 1.01230 1.01918 1.20578 0.95798 0.92519 1.03604 1.19641 1.00406 0.96803 0.91837 1.20894 0.97697 0.92521 0.98063 1.15830 1.09845 0.94751 0.86813 1.25929 0.92598 0.92829 0.92833 1.81174 1.10873 1.09425 1.11282 1.21045 0.98489 0.99129 0.91082 1.20947 0.99696 0.95280 0.97391 1.20704 0.89700 0.92582 0.96205 1.18192 0.95797 0.88997 0.84803 0.92006 1.59589 1.39513 1.21841 1.17325 1.21719 0.99307 1.30180 1.07204 0.92443 1.24990 0.95970 0.95860 0.96551 1.69731 1.25024 1.42285 1.15853 0.86528 0.82482 0.79700 0.78968 1.20592 1.21064 1.19754 0.92920 0.91773 0.93510 0.88374 0.92185 0.86111 0.86119 0.85026 0.82631 0.87835 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.71 37.16 0.36 -1.79 16 2 C -0.09 -1.42 5.37 -27.88 -0.15 -1.57 16 3 C -0.09 -1.48 5.13 -104.69 -0.54 -2.01 16 4 C -0.07 -1.08 9.38 -39.17 -0.37 -1.45 16 5 C -0.07 -1.05 5.73 -106.93 -0.61 -1.66 16 6 C 0.27 4.23 15.33 -22.47 -0.34 3.89 16 7 N -0.45 -7.65 18.54 41.84 0.78 -6.87 16 8 C -0.08 -1.15 9.76 -39.17 -0.38 -1.53 16 9 C -0.11 -1.95 9.25 -39.64 -0.37 -2.32 16 10 C 0.01 0.18 5.00 -104.53 -0.52 -0.34 16 11 C 0.23 5.07 2.27 -70.02 -0.16 4.91 16 12 H 0.06 1.47 5.57 -51.93 -0.29 1.18 16 13 N -0.85 -18.20 8.79 -6.65 -0.06 -18.26 16 14 C -0.54 -13.14 7.90 -34.44 -0.27 -13.42 16 15 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.07 1.71 5.38 -17.82 -0.10 1.62 16 17 N -0.89 -22.61 11.54 55.43 0.64 -21.97 16 18 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.07 6.76 -51.93 -0.35 0.72 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.10 1.85 6.40 -51.93 -0.33 1.51 16 26 H 0.06 0.83 8.05 -51.93 -0.42 0.42 16 27 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.13 2.15 6.27 -52.49 -0.33 1.82 16 30 H 0.36 8.31 7.08 -39.29 -0.28 8.03 16 31 H 0.31 6.27 7.18 -39.29 -0.28 5.99 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 275.72 15.07 4.16 4.16 Total: -1.00 -25.12 275.72 -6.47 -31.59 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.51 Total: 12.42 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -3.45 Total: -15.67 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 1.36 Total: -47.10 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -25.12 -6.47 -31.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104500031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.152 kcal (2) G-P(sol) polarization free energy of solvation -25.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds