Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.37964 * 119.92317 * 265.00223 * 3 2 1 5 5 C 1.39614 * 119.84869 * 180.02562 * 4 3 2 6 6 C 1.43197 * 120.15325 * 179.97438 * 5 4 3 7 7 N 5.95834 * 108.68710 * 322.96349 * 2 1 3 8 8 C 1.39655 * 119.69589 * 359.97438 * 5 4 3 9 9 C 1.37924 * 119.84449 * 0.02562 * 8 5 4 10 10 C 1.38331 * 119.92530 * 84.72848 * 3 2 1 11 11 C 1.50705 * 119.84922 * 0.02562 * 10 3 2 12 12 H 1.09004 * 109.46488 * 324.99598 * 11 10 3 13 13 N 1.46904 * 109.47386 * 205.00114 * 11 10 3 14 14 C 1.50693 * 109.47272 * 84.99761 * 11 10 3 15 15 H 1.07997 * 120.00099 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00023 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99911 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00049 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46962 * 90.00393 * 18 16 14 20 20 H 1.48497 * 109.47224 * 209.99793 * 18 16 14 21 21 H 1.48498 * 109.47310 * 330.00002 * 18 16 14 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.08006 * 120.08048 * 359.97438 * 4 3 2 28 28 H 1.07993 * 120.07716 * 180.02562 * 8 5 4 29 29 H 1.08000 * 119.92276 * 180.02562 * 9 8 5 30 30 H 1.00899 * 110.99863 * 176.04095 * 13 11 10 31 31 H 1.00900 * 110.99442 * 299.99871 * 13 11 10 32 32 H 0.97003 * 120.00049 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3599 2.0350 -1.1912 5 6 2.8256 3.3512 -1.1893 6 6 3.1680 3.9948 -2.4218 7 7 3.4391 4.5055 -3.3997 8 6 2.9559 4.0372 0.0201 9 6 2.6248 3.4111 1.2036 10 6 2.1585 2.1082 1.1938 11 6 1.7933 1.4326 2.4905 12 1 0.9462 0.7664 2.3271 13 7 1.4316 2.4491 3.4875 14 6 2.9704 0.6354 2.9904 15 1 3.8909 0.6197 2.4258 16 6 2.8720 -0.0742 4.1685 17 7 1.7509 -0.0556 4.8557 18 14 4.3308 -1.0631 4.7878 19 1 5.1728 -0.2081 5.6627 20 1 3.8432 -2.2335 5.5607 21 1 5.1362 -1.5337 3.6323 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2571 1.4986 -2.1230 28 1 3.3151 5.0556 0.0287 29 1 2.7247 3.9406 2.1395 30 1 1.1208 2.0193 4.3458 31 1 2.2010 3.0796 3.6566 32 1 1.6818 -0.5545 5.6847 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104500031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = 21.159287 kcal Electronic energy + Delta-G solvation = -15423.772647 eV Core-core repulsion = 12961.859412 eV Total energy + Delta-G solvation = -2461.913235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.71803 -37.81984 -36.31978 -34.90460 -33.53179 -31.09762 -30.25868 -28.03932 -25.53029 -24.57265 -22.21287 -22.03601 -18.98601 -18.51345 -17.31436 -16.75674 -16.16207 -15.60604 -15.15966 -14.88769 -14.70625 -14.67691 -14.30288 -13.83623 -13.75867 -13.57831 -13.28929 -13.01570 -12.84593 -12.67678 -12.44289 -12.40409 -11.86638 -11.81187 -11.49211 -11.21202 -10.63344 -9.64330 -9.43031 -9.08486 -8.06052 -6.30049 0.00333 0.57940 1.40137 1.44822 1.52185 1.65179 2.04910 2.41905 2.95171 3.06007 3.12318 3.97773 4.07949 4.23830 4.37476 4.45182 4.65010 4.68696 4.82089 4.88391 5.02201 5.14303 5.18688 5.27338 5.45844 5.52606 5.57877 5.65420 5.72986 5.99765 6.10689 6.18075 6.49026 6.71755 7.00895 7.18673 7.45457 8.87404 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.007491 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.105182 B = 3737.142258 C = 3933.673769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C -0.095 4.095 4 C -0.062 4.062 5 C -0.062 4.062 6 C 0.291 3.709 7 N -0.471 5.471 8 C -0.066 4.066 9 C -0.122 4.122 10 C -0.018 4.018 11 C 0.237 3.763 12 H 0.037 0.963 13 N -0.846 5.846 14 C -0.548 4.548 15 H 0.047 0.953 16 C 0.029 3.971 17 N -0.912 5.912 18 Si 0.948 3.052 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.064 0.936 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.345 0.655 31 H 0.318 0.682 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 2.065 -6.403 6.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.096 4.096 4 C -0.083 4.083 5 C -0.065 4.065 6 C -0.023 4.023 7 N -0.147 5.147 8 C -0.086 4.086 9 C -0.141 4.141 10 C -0.019 4.019 11 C 0.127 3.873 12 H 0.054 0.946 13 N -0.375 5.375 14 C -0.587 4.587 15 H 0.065 0.935 16 C -0.172 4.172 17 N -0.552 5.552 18 Si 0.775 3.225 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.199 3.004 -8.289 8.819 hybrid contribution 1.372 -1.278 1.739 2.557 sum 1.173 1.725 -6.550 6.874 Atomic orbital electron populations 1.21674 0.94468 1.01925 1.01475 1.20539 0.96498 0.92124 1.03147 1.19742 1.00726 0.97164 0.91933 1.21086 0.96362 0.92548 0.98288 1.15869 1.09221 0.94725 0.86724 1.25756 0.91938 0.92215 0.92401 1.81214 1.11514 1.10098 1.11911 1.21250 0.97137 1.00179 0.90065 1.20996 0.99972 0.94663 0.98445 1.20561 0.92082 0.93781 0.95500 1.17977 0.94052 0.88861 0.86384 0.94566 1.59567 1.39735 1.21630 1.16583 1.21916 0.99615 1.30215 1.06992 0.93491 1.25580 0.97797 0.96833 0.96953 1.69821 1.26248 1.43019 1.16101 0.85713 0.80100 0.78477 0.78248 1.20444 1.21108 1.19819 0.91719 0.94430 0.91569 0.91766 0.89572 0.83463 0.83308 0.84850 0.84001 0.87107 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.71 71.98 0.70 -3.32 16 2 C -0.09 -2.71 5.37 29.85 0.16 -2.55 16 3 C -0.10 -3.13 5.13 -19.91 -0.10 -3.24 16 4 C -0.06 -1.72 9.38 22.54 0.21 -1.51 16 5 C -0.06 -1.69 5.73 -21.36 -0.12 -1.81 16 6 C 0.29 8.12 15.33 88.33 1.35 9.47 16 7 N -0.47 -14.66 18.54 19.00 0.35 -14.30 16 8 C -0.07 -1.80 9.76 22.54 0.22 -1.58 16 9 C -0.12 -4.00 9.25 22.23 0.21 -3.80 16 10 C -0.02 -0.67 5.00 -19.81 -0.10 -0.77 16 11 C 0.24 10.59 2.27 43.42 0.10 10.69 16 12 H 0.04 1.80 5.57 -2.38 -0.01 1.78 16 13 N -0.85 -36.74 8.79 -174.94 -1.54 -38.28 16 14 C -0.55 -26.86 7.90 25.60 0.20 -26.65 16 15 H 0.05 2.35 7.74 -2.91 -0.02 2.33 16 16 C 0.03 1.45 5.38 84.66 0.46 1.90 16 17 N -0.91 -47.20 11.54 21.45 0.25 -46.96 16 18 Si 0.95 40.50 29.54 68.60 2.03 42.53 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.04 1.27 6.76 -2.39 -0.02 1.26 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 2.47 6.40 -2.39 -0.02 2.45 16 26 H 0.09 2.21 8.05 -2.39 -0.02 2.19 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.13 4.23 6.27 -2.91 -0.02 4.21 16 30 H 0.35 16.46 7.08 -89.69 -0.64 15.83 16 31 H 0.32 12.91 7.18 -89.69 -0.64 12.26 16 32 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 Total: -1.00 -53.26 275.72 4.25 -49.01 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.12 Total: 31.15 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.28 Total: -23.15 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -0.94 Total: -99.54 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -53.26 4.25 -49.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104500031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.171 kcal (2) G-P(sol) polarization free energy of solvation -53.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds