Wall clock time and date at job start Mon Mar 30 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37790 * 120.10897 * 2 1 4 4 C 1.38787 * 120.66460 * 179.97438 * 3 2 1 5 5 C 1.36660 * 120.52920 * 359.97438 * 4 3 2 6 6 C 1.39591 * 119.76550 * 0.04308 * 5 4 3 7 7 C 1.46487 * 134.04024 * 179.97438 * 6 5 4 8 8 C 1.34236 * 107.00095 * 179.97438 * 7 6 5 9 9 C 1.50697 * 125.02816 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47205 * 155.02464 * 9 8 7 11 11 N 1.46901 * 109.47277 * 35.02729 * 9 8 7 12 12 C 1.50700 * 109.47266 * 275.02371 * 9 8 7 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 9 8 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 9 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 N 1.36826 * 109.93950 * 0.26620 * 8 7 6 21 21 H 0.97001 * 125.06714 * 179.73794 * 20 8 7 22 22 C 1.37697 * 109.87325 * 359.55569 * 20 8 7 23 23 H 1.09003 * 109.47244 * 270.02639 * 1 2 3 24 24 H 1.09003 * 109.46943 * 30.02665 * 1 2 3 25 25 H 1.09001 * 109.46870 * 150.02361 * 1 2 3 26 26 H 1.07994 * 119.66811 * 359.95461 * 3 2 1 27 27 H 1.07995 * 119.73398 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.11947 * 180.02562 * 5 4 3 29 29 H 1.08004 * 126.49623 * 359.95683 * 7 6 5 30 30 H 1.00893 * 110.99930 * 299.99775 * 11 9 8 31 31 H 1.00899 * 110.99979 * 63.95221 * 11 9 8 32 32 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2054 0.0005 5 6 4.2916 0.0351 0.0016 6 6 3.6117 -1.1840 0.0012 7 6 4.0353 -2.5863 0.0016 8 6 2.9200 -3.3333 0.0015 9 6 2.8880 -4.8399 0.0023 10 1 1.9487 -5.1832 0.4360 11 7 4.0111 -5.3531 0.7981 12 6 3.0024 -5.3456 -1.4127 13 1 3.0900 -4.6460 -2.2307 14 6 2.9952 -6.7015 -1.6629 15 7 2.8941 -7.5536 -0.6662 16 14 3.1377 -7.3284 -3.4168 17 1 4.4180 -6.8614 -4.0069 18 1 3.1061 -8.8130 -3.4159 19 1 2.0030 -6.8090 -4.2218 20 7 1.8166 -2.5242 -0.0049 21 1 0.8977 -2.8350 -0.0098 22 6 2.2048 -1.2031 0.0009 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6547 2.1251 -0.0007 27 1 4.1126 2.1484 0.0001 28 1 5.3715 0.0533 0.0024 29 1 5.0523 -2.9501 0.0016 30 1 4.8939 -5.0486 0.4161 31 1 3.9227 -5.0812 1.7657 32 1 2.8887 -8.5075 -0.8423 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104523966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:30 Heat of formation + Delta-G solvation = 46.298106 kcal Electronic energy + Delta-G solvation = -15342.159166 eV Core-core repulsion = 12881.336031 eV Total energy + Delta-G solvation = -2460.823134 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.77512 -36.96634 -34.23483 -32.87146 -31.49070 -29.46099 -27.89589 -26.55149 -25.98948 -22.80528 -21.42100 -20.25250 -19.25110 -17.14561 -16.48917 -15.52405 -14.94720 -14.45864 -14.22279 -14.08434 -13.73653 -13.11629 -13.00426 -12.84832 -12.34374 -12.16034 -12.09153 -11.36953 -11.16372 -11.00203 -10.79703 -10.74194 -10.48350 -9.94280 -9.36430 -8.99251 -8.51825 -7.62319 -7.34748 -7.00418 -5.97208 -4.13499 1.54578 2.05069 3.31039 3.34911 3.35939 3.46170 3.74078 4.28757 4.43305 5.03741 5.17308 5.27304 5.32544 5.47829 5.65688 5.67371 5.74062 5.92329 6.00411 6.19970 6.27010 6.33854 6.50354 6.56520 6.85702 6.97354 7.00336 7.26866 7.51258 7.74747 7.82231 8.01587 8.18321 8.51534 8.89807 9.02037 9.56053 11.06763 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.006593 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.116130 B = 4245.885308 C = 4388.028140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.121 4.121 4 C -0.151 4.151 5 C -0.085 4.085 6 C -0.094 4.094 7 C -0.241 4.241 8 C 0.109 3.891 9 C 0.275 3.725 10 H 0.046 0.954 11 N -0.799 5.799 12 C -0.535 4.535 13 H 0.056 0.944 14 C 0.085 3.915 15 N -0.846 5.846 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.278 1.278 20 N -0.588 5.588 21 H 0.411 0.589 22 C 0.086 3.914 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.324 0.676 31 H 0.301 0.699 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 12.843 2.350 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.140 4.140 4 C -0.171 4.171 5 C -0.104 4.104 6 C -0.099 4.099 7 C -0.265 4.265 8 C -0.002 4.002 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.324 5.324 12 C -0.574 4.574 13 H 0.074 0.926 14 C -0.122 4.122 15 N -0.480 5.480 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.204 1.204 20 N -0.190 5.190 21 H 0.247 0.753 22 C -0.021 4.021 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.327 11.799 2.213 12.228 hybrid contribution -0.040 0.561 -0.860 1.028 sum -2.367 12.360 1.353 12.657 Atomic orbital electron populations 1.20667 0.91879 1.02286 1.01742 1.18809 0.94934 0.90434 1.05781 1.20497 0.94076 0.95909 1.03541 1.20443 0.93948 0.97373 1.05290 1.20183 0.99019 0.90769 1.00436 1.19296 0.92017 0.93855 1.04736 1.21221 0.97915 0.89660 1.17658 1.23004 0.84963 0.97003 0.95272 1.17971 0.92575 0.77957 0.95150 0.93664 1.59276 1.04479 1.65741 1.02929 1.20746 1.54886 0.91665 0.90072 0.92620 1.24940 0.93990 0.96810 0.96503 1.70091 1.45976 1.01776 1.30135 0.86739 0.78753 0.77624 0.85243 1.20156 1.21222 1.20392 1.41967 1.08807 1.03559 1.64654 0.75314 1.18132 0.93917 0.84839 1.05256 0.91718 0.91613 0.92379 0.86633 0.86848 0.86768 0.84513 0.86369 0.88836 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.02 36.01 0.36 -0.97 16 2 C -0.10 -1.50 5.89 -104.47 -0.62 -2.12 16 3 C -0.12 -1.72 9.67 -39.54 -0.38 -2.10 16 4 C -0.15 -2.17 9.97 -39.95 -0.40 -2.57 16 5 C -0.09 -1.39 10.05 -39.65 -0.40 -1.79 16 6 C -0.09 -1.79 6.37 -105.14 -0.67 -2.46 16 7 C -0.24 -4.89 10.33 -37.67 -0.39 -5.28 16 8 C 0.11 2.31 6.07 -81.78 -0.50 1.81 16 9 C 0.27 6.56 3.13 -70.02 -0.22 6.34 16 10 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 11 N -0.80 -18.16 8.37 -6.65 -0.06 -18.22 16 12 C -0.53 -14.32 8.71 -34.44 -0.30 -14.62 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.09 2.31 5.39 -17.82 -0.10 2.21 16 15 N -0.85 -23.88 12.76 55.43 0.71 -23.17 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 N -0.59 -11.07 6.07 -6.95 -0.04 -11.11 16 21 H 0.41 6.85 8.86 -40.82 -0.36 6.49 16 22 C 0.09 1.58 6.95 -83.99 -0.58 1.00 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.06 0.71 7.98 -51.93 -0.41 0.29 16 26 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.14 2.64 7.39 -52.48 -0.39 2.25 16 30 H 0.32 7.09 7.93 -39.30 -0.31 6.77 16 31 H 0.30 6.14 9.06 -39.29 -0.36 5.78 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 276.44 15.07 4.17 4.17 Total: -1.00 -29.47 276.44 -8.34 -37.81 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -3.91 Total: 15.08 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -4.19 Total: -20.54 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.61 Total: -52.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.47 -8.34 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104523966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.107 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds