Wall clock time and date at job start Mon Mar 30 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37790 * 120.10897 * 2 1 4 4 C 1.38787 * 120.66460 * 179.97438 * 3 2 1 5 5 C 1.36660 * 120.52920 * 359.97438 * 4 3 2 6 6 C 1.39591 * 119.76550 * 0.04308 * 5 4 3 7 7 C 1.46487 * 134.04024 * 179.97438 * 6 5 4 8 8 C 1.34236 * 107.00095 * 179.97438 * 7 6 5 9 9 C 1.50697 * 125.02816 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47205 * 155.02464 * 9 8 7 11 11 N 1.46901 * 109.47277 * 35.02729 * 9 8 7 12 12 C 1.50700 * 109.47266 * 275.02371 * 9 8 7 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 9 8 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 9 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 N 1.36826 * 109.93950 * 0.26620 * 8 7 6 21 21 H 0.97001 * 125.06714 * 179.73794 * 20 8 7 22 22 C 1.37697 * 109.87325 * 359.55569 * 20 8 7 23 23 H 1.09003 * 109.47244 * 270.02639 * 1 2 3 24 24 H 1.09003 * 109.46943 * 30.02665 * 1 2 3 25 25 H 1.09001 * 109.46870 * 150.02361 * 1 2 3 26 26 H 1.07994 * 119.66811 * 359.95461 * 3 2 1 27 27 H 1.07995 * 119.73398 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.11947 * 180.02562 * 5 4 3 29 29 H 1.08004 * 126.49623 * 359.95683 * 7 6 5 30 30 H 1.00893 * 110.99930 * 299.99775 * 11 9 8 31 31 H 1.00899 * 110.99979 * 63.95221 * 11 9 8 32 32 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2054 0.0005 5 6 4.2916 0.0351 0.0016 6 6 3.6117 -1.1840 0.0012 7 6 4.0353 -2.5863 0.0016 8 6 2.9200 -3.3333 0.0015 9 6 2.8880 -4.8399 0.0023 10 1 1.9487 -5.1832 0.4360 11 7 4.0111 -5.3531 0.7981 12 6 3.0024 -5.3456 -1.4127 13 1 3.0900 -4.6460 -2.2307 14 6 2.9952 -6.7015 -1.6629 15 7 2.8941 -7.5536 -0.6662 16 14 3.1377 -7.3284 -3.4168 17 1 4.4180 -6.8614 -4.0069 18 1 3.1061 -8.8130 -3.4159 19 1 2.0030 -6.8090 -4.2218 20 7 1.8166 -2.5242 -0.0049 21 1 0.8977 -2.8350 -0.0098 22 6 2.2048 -1.2031 0.0009 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6547 2.1251 -0.0007 27 1 4.1126 2.1484 0.0001 28 1 5.3715 0.0533 0.0024 29 1 5.0523 -2.9501 0.0016 30 1 4.8939 -5.0486 0.4161 31 1 3.9227 -5.0812 1.7657 32 1 2.8887 -8.5075 -0.8423 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104523966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:30 Heat of formation + Delta-G solvation = 27.374340 kcal Electronic energy + Delta-G solvation = -15342.979762 eV Core-core repulsion = 12881.336031 eV Total energy + Delta-G solvation = -2461.643731 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15840 -38.30811 -36.03354 -34.10107 -33.43827 -30.78593 -29.41790 -28.02676 -27.54585 -24.56224 -22.68532 -21.60492 -20.83470 -18.63756 -18.36473 -16.98358 -16.62354 -15.94625 -15.85965 -15.47404 -15.10375 -14.68519 -14.32195 -14.20738 -13.89051 -13.58943 -13.29940 -13.03098 -12.74398 -12.67394 -12.28539 -12.27335 -11.87827 -11.66041 -11.32715 -10.60405 -10.35304 -9.17761 -8.91844 -8.44317 -8.03316 -6.26780 0.28033 0.80274 1.42068 1.43504 1.50729 1.89439 2.32717 2.46695 3.03367 3.20254 3.86423 4.01522 4.13193 4.31340 4.38861 4.46893 4.49917 4.74756 4.77160 4.82202 4.89989 5.03207 5.18491 5.24133 5.34607 5.67651 5.70609 5.74896 5.93216 5.97669 6.12328 6.35475 6.58225 6.75475 6.99645 7.16941 7.46181 8.98809 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.006593 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.116130 B = 4245.885308 C = 4388.028140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.113 4.113 4 C -0.144 4.144 5 C -0.099 4.099 6 C -0.126 4.126 7 C -0.245 4.245 8 C 0.086 3.914 9 C 0.283 3.717 10 H 0.019 0.981 11 N -0.807 5.807 12 C -0.547 4.547 13 H 0.042 0.958 14 C 0.041 3.959 15 N -0.875 5.875 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.274 1.274 20 N -0.588 5.588 21 H 0.415 0.585 22 C 0.069 3.931 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.327 0.673 31 H 0.314 0.686 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 15.322 1.882 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.132 4.132 4 C -0.163 4.163 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.270 4.270 8 C -0.026 4.026 9 C 0.171 3.829 10 H 0.037 0.963 11 N -0.333 5.333 12 C -0.586 4.586 13 H 0.061 0.939 14 C -0.164 4.164 15 N -0.510 5.510 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.200 1.200 20 N -0.191 5.191 21 H 0.253 0.747 22 C -0.038 4.038 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.171 0.829 27 H 0.167 0.833 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.627 14.295 1.747 14.639 hybrid contribution 0.048 -0.025 -0.677 0.679 sum -2.579 14.270 1.070 14.541 Atomic orbital electron populations 1.20721 0.89645 1.03226 1.02801 1.19281 0.96801 0.89757 1.05182 1.21033 0.94347 0.96803 1.01046 1.20911 0.94361 0.98028 1.02961 1.20485 1.00102 0.90501 1.00664 1.19547 0.92864 0.94017 1.06700 1.21353 0.97635 0.90922 1.17043 1.22429 0.86264 0.95783 0.98132 1.17553 0.91606 0.79988 0.93708 0.96341 1.59108 1.04329 1.66226 1.03679 1.20980 1.54608 0.91782 0.91248 0.93935 1.25620 0.93729 0.96990 1.00039 1.70198 1.47031 1.01873 1.31913 0.85786 0.78624 0.77192 0.80913 1.20047 1.20609 1.19970 1.41853 1.08513 1.03872 1.64833 0.74731 1.18545 0.94202 0.85177 1.05901 0.90525 0.89168 0.92984 0.82886 0.83289 0.85307 0.84559 0.85987 0.87468 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 10.02 71.24 0.71 -1.61 16 2 C -0.11 -3.07 5.89 -19.77 -0.12 -3.19 16 3 C -0.11 -2.75 9.67 22.30 0.22 -2.53 16 4 C -0.14 -3.58 9.97 22.03 0.22 -3.36 16 5 C -0.10 -3.04 10.05 22.23 0.22 -2.81 16 6 C -0.13 -4.77 6.37 -20.20 -0.13 -4.90 16 7 C -0.24 -10.18 10.33 23.51 0.24 -9.94 16 8 C 0.09 3.74 6.07 40.87 0.25 3.99 16 9 C 0.28 14.04 3.13 43.42 0.14 14.18 16 10 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 11 N -0.81 -37.84 8.37 -174.95 -1.46 -39.30 16 12 C -0.55 -30.13 8.71 25.60 0.22 -29.90 16 13 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 14 C 0.04 2.25 5.39 84.66 0.46 2.71 16 15 N -0.88 -50.30 12.76 21.45 0.27 -50.03 16 16 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 N -0.59 -22.60 6.07 -175.92 -1.07 -23.67 16 21 H 0.42 14.32 8.86 -92.71 -0.82 13.50 16 22 C 0.07 2.48 6.95 39.03 0.27 2.75 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 25 H 0.05 1.18 7.98 -2.39 -0.02 1.16 16 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.14 5.44 7.39 -2.91 -0.02 5.42 16 30 H 0.33 14.77 7.93 -89.70 -0.71 14.06 16 31 H 0.31 13.19 9.06 -89.70 -0.81 12.38 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -63.68 276.44 1.29 -62.39 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -1.19 Total: 39.59 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.70 Total: -34.61 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -2.26 Total: -113.00 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.68 1.29 -62.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104523966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.769 kcal (2) G-P(sol) polarization free energy of solvation -63.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds