Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47066 * 89.99903 * 3 2 1 5 5 H 1.48493 * 109.47061 * 210.00005 * 3 2 1 6 6 H 1.48499 * 109.47363 * 329.99878 * 3 2 1 7 7 C 1.38889 * 119.99769 * 180.27415 * 2 1 3 8 8 H 1.07997 * 119.99955 * 159.66646 * 7 2 1 9 9 N 1.36856 * 119.99862 * 339.66781 * 7 2 1 10 10 C 1.46728 * 124.60629 * 148.77813 * 9 7 2 11 11 C 1.54194 * 106.64384 * 181.94165 * 10 9 7 12 12 C 1.54612 * 102.71905 * 15.60388 * 11 10 9 13 13 C 1.36669 * 124.61014 * 328.47210 * 9 7 2 14 14 N 1.30353 * 125.84626 * 340.45592 * 13 9 7 15 15 C 1.36962 * 120.00135 * 175.54382 * 14 13 9 16 16 C 1.39648 * 120.14703 * 314.72004 * 15 14 13 17 17 C 1.37939 * 119.84311 * 179.76792 * 16 15 14 18 18 C 1.38367 * 120.14984 * 0.51147 * 17 16 15 19 19 C 1.38373 * 120.31196 * 359.74506 * 18 17 16 20 20 C 1.37939 * 120.14957 * 359.97438 * 19 18 17 21 21 H 0.97002 * 120.00785 * 173.76673 * 1 2 3 22 22 H 1.09003 * 110.02563 * 301.23762 * 10 9 7 23 23 H 1.09003 * 110.02578 * 62.60213 * 10 9 7 24 24 H 1.08996 * 110.75760 * 133.90698 * 11 10 9 25 25 H 1.08996 * 110.76613 * 257.10773 * 11 10 9 26 26 H 1.08998 * 110.64579 * 92.61689 * 12 11 10 27 27 H 1.09004 * 110.64119 * 215.68293 * 12 11 10 28 28 H 1.08004 * 120.07693 * 0.02562 * 16 15 14 29 29 H 1.08009 * 119.92046 * 180.22978 * 17 16 15 30 30 H 1.08006 * 119.84656 * 179.71884 * 18 17 16 31 31 H 1.08000 * 119.93091 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.07673 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4962 2.0464 1.4001 5 1 3.5462 1.4401 -0.7000 6 1 1.4462 2.6527 -0.7000 7 6 2.0091 -1.2028 -0.0058 8 1 3.0386 -1.2304 -0.3309 9 7 1.3887 -2.3530 0.4006 10 6 1.6891 -3.6910 -0.1215 11 6 0.7231 -4.6662 0.5809 12 6 -0.3437 -3.7188 1.1764 13 6 0.4094 -2.4123 1.3520 14 7 0.1642 -1.5026 2.2528 15 6 -0.9080 -1.6427 3.0935 16 6 -2.1509 -2.0279 2.5867 17 6 -3.2253 -2.1718 3.4397 18 6 -3.0761 -1.9252 4.7930 19 6 -1.8487 -1.5381 5.3012 20 6 -0.7644 -1.3959 4.4605 21 1 -0.4851 -0.8350 -0.0912 22 1 1.5269 -3.7163 -1.1991 23 1 2.7211 -3.9577 0.1067 24 1 0.2737 -5.3502 -0.1390 25 1 1.2362 -5.2185 1.3681 26 1 -1.1776 -3.5962 0.4853 27 1 -0.6931 -4.0907 2.1397 28 1 -2.2697 -2.2167 1.5299 29 1 -4.1864 -2.4732 3.0496 30 1 -3.9218 -2.0350 5.4559 31 1 -1.7391 -1.3476 6.3586 32 1 0.1930 -1.0933 4.8583 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105606285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = 55.688499 kcal Electronic energy + Delta-G solvation = -15892.029307 eV Core-core repulsion = 13431.613371 eV Total energy + Delta-G solvation = -2460.415936 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.20729 -37.85925 -33.71139 -33.35390 -30.26385 -29.94396 -28.52974 -26.03699 -24.54780 -21.76856 -21.46178 -20.62485 -19.42096 -17.31880 -15.95697 -15.51052 -15.27701 -14.23622 -14.13251 -13.71024 -13.49748 -12.96007 -12.74292 -12.61079 -12.25391 -12.02073 -11.84501 -10.99296 -10.90712 -10.81247 -10.73788 -10.47284 -10.21932 -9.90907 -9.65526 -9.00002 -8.41741 -8.16242 -7.65339 -6.84009 -6.25470 -3.92071 2.07468 2.22279 3.34095 3.43409 3.53878 3.69178 4.17660 4.62110 4.80375 5.11313 5.14378 5.26765 5.33022 5.62327 5.67967 5.82714 5.83751 6.02415 6.10279 6.13244 6.22621 6.29312 6.36735 6.42663 6.47908 6.85793 7.02522 7.26816 7.31369 7.42720 7.60176 7.87033 8.18091 8.42201 9.23465 9.40305 9.86866 10.67608 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.010648 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.271137 B = 2629.032930 C = 3456.087522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.083 2.917 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.421 5.421 10 C 0.101 3.899 11 C -0.132 4.132 12 C -0.128 4.128 13 C 0.354 3.646 14 N -0.579 5.579 15 C 0.195 3.805 16 C -0.198 4.198 17 C -0.095 4.095 18 C -0.193 4.193 19 C -0.096 4.096 20 C -0.163 4.163 21 H 0.275 0.725 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 -6.967 2.352 7.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.909 3.091 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.522 4.522 8 H 0.099 0.901 9 N -0.117 5.117 10 C -0.023 4.023 11 C -0.170 4.170 12 C -0.170 4.170 13 C 0.088 3.912 14 N -0.308 5.308 15 C 0.085 3.915 16 C -0.220 4.220 17 C -0.114 4.114 18 C -0.213 4.213 19 C -0.115 4.115 20 C -0.184 4.184 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.015 -4.584 2.385 5.266 hybrid contribution -0.424 -2.175 -0.200 2.225 sum -1.439 -6.758 2.184 7.247 Atomic orbital electron populations 1.70560 1.07238 1.31443 1.36048 1.26301 0.96047 1.02243 0.94304 0.83301 0.74246 0.74170 0.77398 1.20700 1.21275 1.20901 1.20112 0.97696 0.86026 1.48393 0.90141 1.42449 1.35311 1.05279 1.28644 1.22028 0.98394 0.83790 0.98129 1.22435 0.97158 0.97272 1.00182 1.22125 0.97932 0.95199 1.01715 1.22081 0.92288 0.90037 0.86777 1.68135 1.23157 1.28429 1.11118 1.18732 0.90352 0.90520 0.91866 1.21682 0.94107 1.07112 0.99147 1.20793 0.97513 0.99393 0.93669 1.20672 0.97209 1.08152 0.95232 1.20778 0.92996 0.99300 0.98444 1.20840 0.98627 1.06810 0.92144 0.91368 0.92022 0.92451 0.90614 0.90973 0.90230 0.90209 0.87408 0.87794 0.87807 0.87445 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.13 12.37 55.49 0.69 -23.45 16 2 C 0.03 0.70 4.77 -17.46 -0.08 0.61 16 3 Si 1.08 24.76 29.96 -169.99 -5.09 19.67 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.39 -10.56 9.84 -15.07 -0.15 -10.71 16 8 H 0.08 2.09 7.91 -52.49 -0.42 1.67 16 9 N -0.42 -10.27 2.91 -111.00 -0.32 -10.60 16 10 C 0.10 1.89 7.27 -3.29 -0.02 1.86 16 11 C -0.13 -2.08 7.07 -25.26 -0.18 -2.26 16 12 C -0.13 -2.43 4.93 -26.48 -0.13 -2.56 16 13 C 0.35 8.57 5.17 -153.48 -0.79 7.77 16 14 N -0.58 -15.29 8.69 -7.66 -0.07 -15.36 16 15 C 0.20 4.64 5.74 -84.52 -0.49 4.15 16 16 C -0.20 -4.27 8.03 -39.16 -0.31 -4.58 16 17 C -0.09 -1.76 10.03 -39.64 -0.40 -2.16 16 18 C -0.19 -3.40 10.04 -39.48 -0.40 -3.79 16 19 C -0.10 -1.77 10.03 -39.64 -0.40 -2.17 16 20 C -0.16 -3.51 9.99 -39.16 -0.39 -3.90 16 21 H 0.27 8.12 6.73 -40.82 -0.27 7.84 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.48 7.39 -51.93 -0.38 1.09 16 27 H 0.08 1.48 7.20 -51.93 -0.37 1.10 16 28 H 0.11 2.35 6.46 -52.48 -0.34 2.01 16 29 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.10 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.11 2.39 8.06 -52.48 -0.42 1.96 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -31.10 268.67 -8.45 -39.55 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.96 Total: 3.87 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -3.74 Total: -17.73 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.30 Total: -49.40 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.67 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.10 -8.45 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105606285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.241 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds