Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47066 * 89.99903 * 3 2 1 5 5 H 1.48493 * 109.47061 * 210.00005 * 3 2 1 6 6 H 1.48499 * 109.47363 * 329.99878 * 3 2 1 7 7 C 1.38889 * 119.99769 * 180.27415 * 2 1 3 8 8 H 1.07997 * 119.99955 * 159.66646 * 7 2 1 9 9 N 1.36856 * 119.99862 * 339.66781 * 7 2 1 10 10 C 1.46728 * 124.60629 * 148.77813 * 9 7 2 11 11 C 1.54194 * 106.64384 * 181.94165 * 10 9 7 12 12 C 1.54612 * 102.71905 * 15.60388 * 11 10 9 13 13 C 1.36669 * 124.61014 * 328.47210 * 9 7 2 14 14 N 1.30353 * 125.84626 * 340.45592 * 13 9 7 15 15 C 1.36962 * 120.00135 * 175.54382 * 14 13 9 16 16 C 1.39648 * 120.14703 * 314.72004 * 15 14 13 17 17 C 1.37939 * 119.84311 * 179.76792 * 16 15 14 18 18 C 1.38367 * 120.14984 * 0.51147 * 17 16 15 19 19 C 1.38373 * 120.31196 * 359.74506 * 18 17 16 20 20 C 1.37939 * 120.14957 * 359.97438 * 19 18 17 21 21 H 0.97002 * 120.00785 * 173.76673 * 1 2 3 22 22 H 1.09003 * 110.02563 * 301.23762 * 10 9 7 23 23 H 1.09003 * 110.02578 * 62.60213 * 10 9 7 24 24 H 1.08996 * 110.75760 * 133.90698 * 11 10 9 25 25 H 1.08996 * 110.76613 * 257.10773 * 11 10 9 26 26 H 1.08998 * 110.64579 * 92.61689 * 12 11 10 27 27 H 1.09004 * 110.64119 * 215.68293 * 12 11 10 28 28 H 1.08004 * 120.07693 * 0.02562 * 16 15 14 29 29 H 1.08009 * 119.92046 * 180.22978 * 17 16 15 30 30 H 1.08006 * 119.84656 * 179.71884 * 18 17 16 31 31 H 1.08000 * 119.93091 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.07673 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4962 2.0464 1.4001 5 1 3.5462 1.4401 -0.7000 6 1 1.4462 2.6527 -0.7000 7 6 2.0091 -1.2028 -0.0058 8 1 3.0386 -1.2304 -0.3309 9 7 1.3887 -2.3530 0.4006 10 6 1.6891 -3.6910 -0.1215 11 6 0.7231 -4.6662 0.5809 12 6 -0.3437 -3.7188 1.1764 13 6 0.4094 -2.4123 1.3520 14 7 0.1642 -1.5026 2.2528 15 6 -0.9080 -1.6427 3.0935 16 6 -2.1509 -2.0279 2.5867 17 6 -3.2253 -2.1718 3.4397 18 6 -3.0761 -1.9252 4.7930 19 6 -1.8487 -1.5381 5.3012 20 6 -0.7644 -1.3959 4.4605 21 1 -0.4851 -0.8350 -0.0912 22 1 1.5269 -3.7163 -1.1991 23 1 2.7211 -3.9577 0.1067 24 1 0.2737 -5.3502 -0.1390 25 1 1.2362 -5.2185 1.3681 26 1 -1.1776 -3.5962 0.4853 27 1 -0.6931 -4.0907 2.1397 28 1 -2.2697 -2.2167 1.5299 29 1 -4.1864 -2.4732 3.0496 30 1 -3.9218 -2.0350 5.4559 31 1 -1.7391 -1.3476 6.3586 32 1 0.1930 -1.0933 4.8583 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105606285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = 37.951672 kcal Electronic energy + Delta-G solvation = -15892.798434 eV Core-core repulsion = 13431.613371 eV Total energy + Delta-G solvation = -2461.185063 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.86708 -39.44701 -35.40167 -35.15887 -31.94827 -31.55744 -30.13456 -27.62876 -26.45080 -23.31220 -23.05420 -22.13557 -21.23066 -19.06274 -17.63573 -17.09201 -16.88226 -15.87619 -15.83282 -15.42358 -15.12223 -14.58790 -14.40890 -14.18659 -13.79594 -13.51863 -13.45466 -12.72742 -12.50238 -12.34301 -12.21073 -12.01145 -11.94941 -11.81649 -11.21515 -10.86845 -10.20438 -9.71844 -9.47390 -8.83111 -8.08996 -5.95729 0.46533 0.65239 1.48902 1.59641 1.73992 1.99510 2.40705 2.90463 3.12728 3.27509 3.65152 3.73788 3.99106 4.17041 4.23614 4.39400 4.40032 4.48419 4.63413 4.71564 4.77170 4.77950 4.86631 4.98711 5.15214 5.30054 5.44239 5.51070 5.71554 5.77747 5.94202 6.11039 6.33227 6.55527 7.30316 7.54689 8.08716 8.61565 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.010648 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.271137 B = 2629.032930 C = 3456.087522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C -0.019 4.019 3 Si 1.122 2.878 4 H -0.291 1.291 5 H -0.257 1.257 6 H -0.284 1.284 7 C -0.412 4.412 8 H 0.079 0.921 9 N -0.453 5.453 10 C 0.095 3.905 11 C -0.114 4.114 12 C -0.120 4.120 13 C 0.350 3.650 14 N -0.625 5.625 15 C 0.158 3.842 16 C -0.209 4.209 17 C -0.093 4.093 18 C -0.177 4.177 19 C -0.090 4.090 20 C -0.184 4.184 21 H 0.259 0.741 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 -8.446 3.604 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.226 4.226 3 Si 0.944 3.056 4 H -0.218 1.218 5 H -0.181 1.181 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.096 0.904 9 N -0.152 5.152 10 C -0.028 4.028 11 C -0.152 4.152 12 C -0.162 4.162 13 C 0.083 3.917 14 N -0.354 5.354 15 C 0.050 3.950 16 C -0.231 4.231 17 C -0.111 4.111 18 C -0.196 4.196 19 C -0.108 4.108 20 C -0.206 4.206 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.132 0.868 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.224 -6.083 3.655 7.437 hybrid contribution -0.156 -1.810 -0.381 1.856 sum -2.379 -7.893 3.273 8.870 Atomic orbital electron populations 1.70672 1.08181 1.30366 1.40176 1.27470 0.96140 1.05296 0.93705 0.82828 0.74661 0.71180 0.76939 1.21795 1.18059 1.20929 1.20240 0.97770 0.87408 1.48600 0.90368 1.42771 1.36103 1.06492 1.29803 1.22244 0.99807 0.82022 0.98750 1.22476 0.95285 0.96380 1.01074 1.22064 0.98373 0.93480 1.02240 1.22739 0.91650 0.91379 0.85936 1.68059 1.24540 1.30528 1.12310 1.19013 0.90714 0.92737 0.92543 1.21642 0.94489 1.07893 0.99092 1.21186 0.97844 0.98127 0.93988 1.21200 0.98012 1.05137 0.95285 1.21180 0.92205 0.97606 0.99823 1.20994 0.99646 1.07899 0.92042 0.93048 0.91430 0.91466 0.86814 0.89169 0.90030 0.89793 0.88732 0.84502 0.83492 0.83842 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -52.80 12.37 21.66 0.27 -52.53 16 2 C -0.02 -1.06 4.77 84.90 0.41 -0.66 16 3 Si 1.12 51.53 29.96 68.60 2.06 53.58 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.41 -22.79 9.84 84.07 0.83 -21.96 16 8 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 9 N -0.45 -22.62 2.91 -505.09 -1.47 -24.09 16 10 C 0.09 3.48 7.27 86.74 0.63 4.12 16 11 C -0.11 -3.33 7.07 31.55 0.22 -3.10 16 12 C -0.12 -4.48 4.93 30.76 0.15 -4.33 16 13 C 0.35 17.35 5.17 138.00 0.71 18.07 16 14 N -0.62 -34.20 8.69 -178.14 -1.55 -35.74 16 15 C 0.16 7.62 5.74 39.02 0.22 7.84 16 16 C -0.21 -8.94 8.03 22.54 0.18 -8.76 16 17 C -0.09 -3.18 10.03 22.23 0.22 -2.96 16 18 C -0.18 -5.47 10.04 22.33 0.22 -5.25 16 19 C -0.09 -3.03 10.03 22.23 0.22 -2.81 16 20 C -0.18 -7.93 9.99 22.54 0.23 -7.70 16 21 H 0.26 16.12 6.73 -92.71 -0.62 15.49 16 22 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.08 3.01 7.39 -2.39 -0.02 2.99 16 27 H 0.08 3.03 7.20 -2.39 -0.02 3.02 16 28 H 0.09 4.21 6.46 -2.91 -0.02 4.19 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -71.40 268.67 4.81 -66.59 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 1.25 Total: 19.69 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.25 Total: -27.50 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -2.75 Total: -112.37 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.06 Total: 53.58 kcal Total: -71.40 4.81 -66.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105606285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.546 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds