Wall clock time and date at job start Mon Mar 30 2020 02:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35903 * 117.00213 * 2 1 4 4 C 1.39069 * 119.97315 * 359.97438 * 3 2 1 5 5 C 1.38455 * 120.48350 * 180.67950 * 4 3 2 6 6 C 1.37735 * 120.20431 * 0.02562 * 5 4 3 7 7 C 1.40444 * 119.75005 * 358.68327 * 6 5 4 8 8 C 1.38306 * 119.97814 * 180.02562 * 3 2 1 9 9 C 1.46276 * 119.22303 * 181.18161 * 7 6 5 10 10 C 1.38173 * 119.36462 * 16.04933 * 9 7 6 11 11 C 1.38810 * 119.79396 * 182.31624 * 10 9 7 12 12 H 1.07997 * 119.99832 * 23.71284 * 11 10 9 13 13 C 1.40657 * 120.00088 * 203.71953 * 11 10 9 14 14 N 1.30535 * 120.00029 * 11.22276 * 13 11 10 15 15 Si 1.86803 * 120.00084 * 191.21496 * 13 11 10 16 16 H 1.48503 * 109.46831 * 60.00115 * 15 13 11 17 17 H 1.48491 * 109.47286 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46930 * 300.00558 * 15 13 11 19 19 C 1.50500 * 120.41991 * 2.30887 * 10 9 7 20 20 C 1.50552 * 120.37434 * 177.57392 * 6 5 4 21 21 H 1.09006 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47344 * 299.99757 * 1 2 3 23 23 H 1.08996 * 109.47422 * 59.99869 * 1 2 3 24 24 H 1.07999 * 119.75309 * 0.40674 * 4 3 2 25 25 H 1.08008 * 119.90011 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.19665 * 359.97438 * 8 3 2 27 27 H 1.07993 * 120.31969 * 196.07290 * 9 7 6 28 28 H 0.96999 * 119.99977 * 179.97438 * 14 13 11 29 29 H 1.08995 * 109.24634 * 203.61526 * 19 10 9 30 30 H 1.08999 * 109.23646 * 84.21810 * 19 10 9 31 31 H 1.09002 * 109.31993 * 265.59657 * 20 6 5 32 32 H 1.09006 * 109.32096 * 25.04535 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2880 2.3769 -0.0005 5 6 1.9056 3.6160 -0.0147 6 6 3.2800 3.7051 -0.0289 7 6 4.0546 2.5340 -0.0010 8 6 3.4272 1.2827 -0.0005 9 6 5.5133 2.6427 0.0098 10 6 6.1002 3.8529 0.3261 11 6 7.4821 3.9791 0.2921 12 1 8.0704 3.3117 -0.3202 13 6 8.1163 4.9760 1.0552 14 7 7.4415 5.6359 1.9569 15 14 9.9244 5.3554 0.7786 16 1 10.1289 5.7939 -0.6254 17 1 10.3502 6.4371 1.7025 18 1 10.7314 4.1363 1.0390 19 6 5.2507 5.0354 0.7070 20 6 3.9550 5.0490 -0.0993 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2098 2.3153 0.0057 25 1 1.3077 4.5156 -0.0146 26 1 4.0181 0.3787 -0.0005 27 1 6.1256 1.7854 -0.2276 28 1 7.8790 6.3232 2.4834 29 1 5.8048 5.9535 0.5123 30 1 5.0122 4.9789 1.7691 31 1 4.1799 5.2856 -1.1393 32 1 3.2868 5.8098 0.3044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148764021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:45 Heat of formation + Delta-G solvation = -26.469535 kcal Electronic energy + Delta-G solvation = -15272.502506 eV Core-core repulsion = 12776.231179 eV Total energy + Delta-G solvation = -2496.271327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.29760 -37.56402 -35.24212 -32.81538 -31.18145 -29.20325 -28.30018 -26.47954 -25.15754 -22.35965 -21.19766 -20.62876 -18.40012 -16.84850 -16.02629 -15.64224 -15.20646 -15.04968 -14.40667 -13.73398 -13.29538 -13.17647 -12.68943 -12.30239 -11.95326 -11.83547 -11.57730 -11.33258 -11.23737 -11.00633 -10.85397 -10.57086 -10.16761 -10.08669 -9.69184 -9.30028 -9.19006 -8.56576 -7.41458 -7.17558 -6.75810 -4.48569 2.14198 2.44023 2.86963 2.91348 2.94586 3.65905 3.71424 3.89135 4.66856 5.22909 5.35312 5.43975 5.62289 5.67309 5.85175 6.02724 6.09910 6.36464 6.39687 6.57937 6.59399 6.74851 6.81863 6.95364 7.11937 7.20039 7.26916 7.37577 7.44714 7.57793 7.82401 7.88737 8.15290 8.26555 8.27114 8.78830 8.85995 9.80256 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.056093 B = 0.005937 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.051074 B = 4714.983941 C = 5064.770979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.134 3.866 4 C -0.286 4.286 5 C -0.065 4.065 6 C -0.172 4.172 7 C 0.091 3.909 8 C -0.214 4.214 9 C -0.395 4.395 10 C 0.121 3.879 11 C -0.426 4.426 12 H 0.085 0.915 13 C 0.069 3.931 14 N -0.773 5.773 15 Si 0.919 3.081 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.065 4.065 20 C -0.065 4.065 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.289 0.711 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 -0.600 -1.392 5.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C 0.090 3.910 4 C -0.305 4.305 5 C -0.083 4.083 6 C -0.172 4.172 7 C 0.090 3.910 8 C -0.233 4.233 9 C -0.416 4.416 10 C 0.117 3.883 11 C -0.453 4.453 12 H 0.103 0.897 13 C -0.154 4.154 14 N -0.396 5.396 15 Si 0.743 3.257 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.185 1.185 19 C -0.102 4.102 20 C -0.102 4.102 21 H 0.106 0.894 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.124 0.876 25 H 0.122 0.878 26 H 0.131 0.869 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.426 -0.568 -1.188 5.584 hybrid contribution 0.432 0.266 0.009 0.508 sum -4.994 -0.302 -1.179 5.140 Atomic orbital electron populations 1.22848 0.79934 1.02504 1.00877 1.85999 1.20210 1.28441 1.89578 1.18845 0.92144 0.83054 0.96934 1.20658 0.98065 0.92432 1.19327 1.20416 0.93886 0.95794 0.98218 1.19848 0.92607 0.95146 1.09633 1.18597 0.94147 0.89995 0.88212 1.20179 0.90303 0.97702 1.15088 1.20945 0.89623 0.97326 1.33686 1.19264 0.93035 0.91002 0.84964 1.19636 0.93240 1.11550 1.20863 0.89676 1.26338 1.01803 0.93941 0.93276 1.69700 1.39020 1.16885 1.13955 0.86159 0.80681 0.79174 0.79718 1.18405 1.19978 1.18505 1.20306 0.92824 0.98056 0.99018 1.20263 0.96898 0.93221 0.99857 0.89354 0.93305 0.93317 0.87631 0.87793 0.86945 0.89235 0.89941 0.90984 0.91472 0.92701 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.33 -6.14 10.49 -19.44 -0.20 -6.35 16 3 C 0.13 2.82 6.68 -39.25 -0.26 2.56 16 4 C -0.29 -5.61 9.04 -39.19 -0.35 -5.96 16 5 C -0.06 -1.32 9.67 -39.69 -0.38 -1.70 16 6 C -0.17 -3.91 5.68 -104.05 -0.59 -4.50 16 7 C 0.09 2.23 5.80 -105.18 -0.61 1.62 16 8 C -0.21 -4.94 9.78 -38.90 -0.38 -5.32 16 9 C -0.39 -10.21 9.68 -36.38 -0.35 -10.56 16 10 C 0.12 3.10 5.49 -104.53 -0.57 2.53 16 11 C -0.43 -10.68 8.94 -38.46 -0.34 -11.03 16 12 H 0.09 2.08 7.88 -52.49 -0.41 1.66 16 13 C 0.07 1.58 5.14 -17.19 -0.09 1.49 16 14 N -0.77 -18.07 10.70 55.59 0.59 -17.47 16 15 Si 0.92 17.17 29.58 -169.99 -5.03 12.14 16 16 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 17 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 C -0.06 -1.54 4.28 -28.18 -0.12 -1.66 16 20 C -0.07 -1.40 5.90 -28.15 -0.17 -1.56 16 21 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 23 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 24 H 0.11 1.75 6.27 -52.49 -0.33 1.42 16 25 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 27 H 0.09 2.31 8.06 -52.49 -0.42 1.88 16 28 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 29 H 0.07 1.70 6.64 -51.93 -0.34 1.36 16 30 H 0.07 1.67 7.97 -51.93 -0.41 1.26 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -26.91 268.85 -7.78 -34.69 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.96 Total: 5.57 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: -3.24 Total: -32.64 kcal Atomic # 7 Polarization: -18.07 SS G_CDS: 0.59 Total: -17.47 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.20 Total: -6.35 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.91 -7.78 -34.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148764021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.224 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds