Wall clock time and date at job start Mon Mar 30 2020 02:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35903 * 117.00213 * 2 1 4 4 C 1.39069 * 119.97315 * 359.97438 * 3 2 1 5 5 C 1.38455 * 120.48350 * 180.67950 * 4 3 2 6 6 C 1.37735 * 120.20431 * 0.02562 * 5 4 3 7 7 C 1.40444 * 119.75005 * 358.68327 * 6 5 4 8 8 C 1.38306 * 119.97814 * 180.02562 * 3 2 1 9 9 C 1.46276 * 119.22303 * 181.18161 * 7 6 5 10 10 C 1.38173 * 119.36462 * 16.04933 * 9 7 6 11 11 C 1.38810 * 119.79396 * 182.31624 * 10 9 7 12 12 H 1.07997 * 119.99832 * 23.71284 * 11 10 9 13 13 C 1.40657 * 120.00088 * 203.71953 * 11 10 9 14 14 N 1.30535 * 120.00029 * 11.22276 * 13 11 10 15 15 Si 1.86803 * 120.00084 * 191.21496 * 13 11 10 16 16 H 1.48503 * 109.46831 * 60.00115 * 15 13 11 17 17 H 1.48491 * 109.47286 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46930 * 300.00558 * 15 13 11 19 19 C 1.50500 * 120.41991 * 2.30887 * 10 9 7 20 20 C 1.50552 * 120.37434 * 177.57392 * 6 5 4 21 21 H 1.09006 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47344 * 299.99757 * 1 2 3 23 23 H 1.08996 * 109.47422 * 59.99869 * 1 2 3 24 24 H 1.07999 * 119.75309 * 0.40674 * 4 3 2 25 25 H 1.08008 * 119.90011 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.19665 * 359.97438 * 8 3 2 27 27 H 1.07993 * 120.31969 * 196.07290 * 9 7 6 28 28 H 0.96999 * 119.99977 * 179.97438 * 14 13 11 29 29 H 1.08995 * 109.24634 * 203.61526 * 19 10 9 30 30 H 1.08999 * 109.23646 * 84.21810 * 19 10 9 31 31 H 1.09002 * 109.31993 * 265.59657 * 20 6 5 32 32 H 1.09006 * 109.32096 * 25.04535 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2880 2.3769 -0.0005 5 6 1.9056 3.6160 -0.0147 6 6 3.2800 3.7051 -0.0289 7 6 4.0546 2.5340 -0.0010 8 6 3.4272 1.2827 -0.0005 9 6 5.5133 2.6427 0.0098 10 6 6.1002 3.8529 0.3261 11 6 7.4821 3.9791 0.2921 12 1 8.0704 3.3117 -0.3202 13 6 8.1163 4.9760 1.0552 14 7 7.4415 5.6359 1.9569 15 14 9.9244 5.3554 0.7786 16 1 10.1289 5.7939 -0.6254 17 1 10.3502 6.4371 1.7025 18 1 10.7314 4.1363 1.0390 19 6 5.2507 5.0354 0.7070 20 6 3.9550 5.0490 -0.0993 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2098 2.3153 0.0057 25 1 1.3077 4.5156 -0.0146 26 1 4.0181 0.3787 -0.0005 27 1 6.1256 1.7854 -0.2276 28 1 7.8790 6.3232 2.4834 29 1 5.8048 5.9535 0.5123 30 1 5.0122 4.9789 1.7691 31 1 4.1799 5.2856 -1.1393 32 1 3.2868 5.8098 0.3044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148764021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:45 Heat of formation + Delta-G solvation = -40.057899 kcal Electronic energy + Delta-G solvation = -15273.091742 eV Core-core repulsion = 12776.231179 eV Total energy + Delta-G solvation = -2496.860563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87665 -39.19007 -36.98060 -34.55772 -32.91412 -30.95794 -29.85391 -27.89063 -26.89709 -24.09040 -22.91278 -22.34529 -20.07253 -18.48762 -17.81067 -17.29244 -16.59668 -16.50315 -16.10222 -15.37183 -15.05067 -14.72864 -14.31289 -13.92624 -13.49619 -13.40433 -13.14321 -13.01849 -12.82464 -12.54560 -12.53727 -12.09534 -11.72465 -11.68896 -11.43025 -11.09383 -10.97554 -10.33016 -9.15101 -8.90710 -8.53364 -6.40343 0.42103 0.75084 1.33711 1.38001 1.49991 1.93485 2.14484 2.54321 2.90005 3.39237 4.03330 4.24589 4.31322 4.35653 4.44980 4.49467 4.63928 4.72287 4.72452 4.83512 4.89577 5.00612 5.05962 5.20760 5.29334 5.48876 5.53215 5.57150 5.66594 5.76535 5.99498 6.15974 6.34678 6.37526 6.69897 6.89110 6.97950 8.07497 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.056093 B = 0.005937 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.051074 B = 4714.983941 C = 5064.770979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.134 3.866 4 C -0.272 4.272 5 C -0.060 4.060 6 C -0.192 4.192 7 C 0.063 3.937 8 C -0.238 4.238 9 C -0.428 4.428 10 C 0.097 3.903 11 C -0.462 4.462 12 H 0.077 0.923 13 C 0.036 3.964 14 N -0.793 5.793 15 Si 0.992 3.008 16 H -0.256 1.256 17 H -0.258 1.258 18 H -0.262 1.262 19 C -0.052 4.052 20 C -0.061 4.061 21 H 0.119 0.881 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.146 0.854 25 H 0.143 0.857 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.301 0.699 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 0.399 -1.355 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.259 6.259 3 C 0.090 3.910 4 C -0.290 4.290 5 C -0.078 4.078 6 C -0.192 4.192 7 C 0.063 3.937 8 C -0.257 4.257 9 C -0.449 4.449 10 C 0.093 3.907 11 C -0.488 4.488 12 H 0.095 0.905 13 C -0.185 4.185 14 N -0.416 5.416 15 Si 0.811 3.189 16 H -0.180 1.180 17 H -0.181 1.181 18 H -0.187 1.187 19 C -0.089 4.089 20 C -0.098 4.098 21 H 0.137 0.863 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.164 0.836 25 H 0.160 0.840 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.281 0.418 -1.147 7.382 hybrid contribution 0.780 -0.185 0.011 0.802 sum -6.500 0.233 -1.136 6.603 Atomic orbital electron populations 1.23279 0.76748 1.05181 1.02076 1.85987 1.23425 1.27325 1.89129 1.18894 0.91550 0.84674 0.95915 1.21123 1.00017 0.91431 1.16464 1.20835 0.92987 0.97663 0.96329 1.20082 0.93945 0.94761 1.10421 1.18741 0.93672 0.91561 0.89739 1.20261 0.91957 0.97037 1.16446 1.20970 0.90885 0.97008 1.36003 1.19604 0.93932 0.91659 0.85465 1.19852 0.93454 1.13196 1.22308 0.90530 1.27122 1.06199 0.92903 0.92257 1.69710 1.40989 1.16929 1.13943 0.85090 0.74678 0.79152 0.79973 1.17980 1.18121 1.18657 1.20154 0.93759 0.96855 0.98153 1.20251 0.96137 0.93703 0.99702 0.86258 0.92055 0.91917 0.83649 0.83975 0.88018 0.91405 0.88699 0.91434 0.93303 0.92512 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.34 -12.20 10.49 -92.46 -0.97 -13.17 16 3 C 0.13 5.47 6.68 22.49 0.15 5.62 16 4 C -0.27 -9.71 9.04 22.52 0.20 -9.51 16 5 C -0.06 -2.26 9.67 22.20 0.21 -2.04 16 6 C -0.19 -8.61 5.68 -19.49 -0.11 -8.72 16 7 C 0.06 3.22 5.80 -20.23 -0.12 3.10 16 8 C -0.24 -11.32 9.78 22.71 0.22 -11.10 16 9 C -0.43 -23.68 9.68 24.35 0.24 -23.45 16 10 C 0.10 5.24 5.49 -19.81 -0.11 5.13 16 11 C -0.46 -24.33 8.94 23.00 0.21 -24.12 16 12 H 0.08 3.99 7.88 -2.91 -0.02 3.97 16 13 C 0.04 1.66 5.14 85.48 0.44 2.10 16 14 N -0.79 -37.42 10.70 21.96 0.23 -37.18 16 15 Si 0.99 35.09 29.58 68.60 2.03 37.12 16 16 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 17 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 19 C -0.05 -2.53 4.28 29.66 0.13 -2.40 16 20 C -0.06 -2.57 5.90 29.67 0.18 -2.40 16 21 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 22 H 0.06 1.26 7.65 -2.38 -0.02 1.24 16 23 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 24 H 0.15 4.02 6.27 -2.91 -0.02 4.00 16 25 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 26 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 28 H 0.30 12.54 8.29 -92.71 -0.77 11.77 16 29 H 0.07 3.26 6.64 -2.39 -0.02 3.25 16 30 H 0.05 2.50 7.97 -2.39 -0.02 2.48 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 2.96 8.05 -2.38 -0.02 2.94 16 Total: -1.00 -60.84 268.85 5.15 -55.69 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 1.11 Total: 23.72 kcal Atomic # 6 Polarization: -68.93 SS G_CDS: 2.75 Total: -66.18 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.23 Total: -37.18 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.97 Total: -13.17 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -60.84 5.15 -55.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148764021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.631 kcal (2) G-P(sol) polarization free energy of solvation -60.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds