Wall clock time and date at job start Mon Mar 30 2020 03:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46887 * 2 1 4 4 N 1.30387 * 125.58711 * 270.03865 * 3 2 1 5 5 N 1.40014 * 109.79409 * 179.97438 * 4 3 2 6 6 C 1.46498 * 126.01566 * 180.02562 * 5 4 3 7 7 C 1.37463 * 107.97531 * 0.02562 * 5 4 3 8 8 C 1.38490 * 133.57858 * 179.97438 * 7 5 4 9 9 C 1.40439 * 119.51557 * 179.97438 * 8 7 5 10 10 C 1.41085 * 119.98142 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99667 * 24.85925 * 10 9 8 12 12 C 1.39959 * 120.00351 * 204.86356 * 10 9 8 13 13 N 1.30826 * 119.99617 * 17.99800 * 12 10 9 14 14 Si 1.86802 * 120.00188 * 198.00301 * 12 10 9 15 15 H 1.48503 * 109.46934 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47165 * 119.99544 * 14 12 10 17 17 H 1.48498 * 109.47171 * 239.99752 * 14 12 10 18 18 C 1.41311 * 120.04004 * 0.06013 * 9 8 7 19 19 C 1.35582 * 120.45246 * 359.97293 * 18 9 8 20 20 C 1.40751 * 120.19031 * 359.97438 * 19 18 9 21 21 H 1.09007 * 109.46872 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47037 * 299.99696 * 1 2 3 23 23 H 1.09000 * 109.47154 * 60.00541 * 1 2 3 24 24 H 1.08998 * 109.47015 * 239.99771 * 2 1 3 25 25 H 1.08998 * 109.47171 * 119.99996 * 2 1 3 26 26 H 1.09002 * 109.47134 * 89.97639 * 6 5 4 27 27 H 1.08999 * 109.47231 * 209.97733 * 6 5 4 28 28 H 1.08997 * 109.47144 * 329.97933 * 6 5 4 29 29 H 1.07996 * 120.24189 * 0.06937 * 8 7 5 30 30 H 0.97005 * 119.99749 * 180.02562 * 13 12 10 31 31 H 1.08005 * 119.77801 * 180.24828 * 18 9 8 32 32 H 1.08000 * 119.91065 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1364 -1.0603 5 7 2.7332 3.4068 -0.6793 6 6 3.1158 4.4928 -1.5851 7 6 2.7518 3.4558 0.6944 8 6 3.0987 4.4350 1.6101 9 6 3.0029 4.1622 2.9844 10 6 3.3533 5.1528 3.9260 11 1 3.3050 6.1971 3.6544 12 6 3.7634 4.7824 5.2118 13 7 4.1606 3.5577 5.4442 14 14 3.7436 6.0365 6.5961 15 1 3.2566 7.3396 6.0765 16 1 2.8413 5.5659 7.6776 17 1 5.1177 6.2012 7.1346 18 6 2.5565 2.8959 3.4249 19 6 2.2174 1.9368 2.5284 20 6 2.3069 2.1951 1.1477 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.2415 5.1040 -1.8092 27 1 3.8786 5.1101 -1.1105 28 1 3.5118 4.0725 -2.5094 29 1 3.4389 5.4019 1.2699 30 1 4.4445 3.3009 6.3355 31 1 2.4806 2.6920 4.4828 32 1 1.8769 0.9722 2.8747 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148883677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:14 Heat of formation + Delta-G solvation = 64.330170 kcal Electronic energy + Delta-G solvation = -15416.488500 eV Core-core repulsion = 12956.447294 eV Total energy + Delta-G solvation = -2460.041206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05417 -36.21177 -34.12254 -33.30800 -31.00206 -29.45467 -28.67311 -25.73310 -25.19151 -22.86747 -21.10722 -20.54978 -18.56836 -17.29946 -15.80593 -15.35222 -15.07360 -14.55806 -13.83656 -13.68485 -13.44554 -12.90810 -12.71092 -12.43340 -11.92172 -11.84802 -11.62918 -11.31416 -11.25427 -10.85849 -10.84743 -10.66863 -10.23213 -10.07983 -9.64092 -9.39076 -9.16628 -8.71782 -7.32186 -6.99335 -6.61106 -4.50077 2.27948 2.89887 2.99885 3.05354 3.19117 3.44799 3.64656 3.81490 4.52880 5.18855 5.43254 5.53142 5.56677 5.77151 5.77786 5.90606 5.98892 6.01327 6.16054 6.19977 6.55553 6.55830 6.68017 6.83159 6.90476 6.95886 7.15289 7.44742 7.73654 7.80929 7.90446 8.12686 8.26191 8.46111 8.71036 8.77833 8.91749 9.98704 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034034 B = 0.007361 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.503523 B = 3802.847045 C = 4449.722795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C 0.105 3.895 4 N -0.319 5.319 5 N -0.434 5.434 6 C 0.128 3.872 7 C 0.172 3.828 8 C -0.291 4.291 9 C 0.151 3.849 10 C -0.446 4.446 11 H 0.083 0.917 12 C 0.076 3.924 13 N -0.779 5.779 14 Si 0.912 3.088 15 H -0.258 1.258 16 H -0.269 1.269 17 H -0.273 1.273 18 C -0.156 4.156 19 C -0.054 4.054 20 C -0.267 4.267 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.284 0.716 31 H 0.122 0.878 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -1.814 -3.347 4.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.068 4.068 4 N -0.134 5.134 5 N -0.224 5.224 6 C -0.015 4.015 7 C 0.060 3.940 8 C -0.316 4.316 9 C 0.146 3.854 10 C -0.476 4.476 11 H 0.101 0.899 12 C -0.144 4.144 13 N -0.403 5.403 14 Si 0.736 3.264 15 H -0.182 1.182 16 H -0.194 1.194 17 H -0.198 1.198 18 C -0.176 4.176 19 C -0.074 4.074 20 C -0.275 4.275 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.603 -1.824 -4.587 5.581 hybrid contribution 0.213 0.708 1.449 1.626 sum -2.390 -1.115 -3.139 4.100 Atomic orbital electron populations 1.21678 0.94902 1.01020 1.02335 1.19847 0.95645 0.89896 1.02408 1.21879 0.98653 0.95727 0.90524 1.76368 1.21846 0.91596 1.23610 1.47857 1.60966 1.10457 1.03115 1.21349 0.99693 0.87298 0.93148 1.18714 0.96571 0.95930 0.82786 1.19670 1.21997 0.98474 0.91478 1.17390 0.85682 0.91927 0.90406 1.19670 1.37852 0.94915 0.95114 0.89904 1.26026 0.92212 0.96100 1.00097 1.69846 1.28095 1.18900 1.23493 0.86197 0.78819 0.81361 0.80065 1.18187 1.19444 1.19790 1.20995 1.03163 0.94342 0.99105 1.19939 0.99121 0.97795 0.90590 1.18284 1.20427 0.95067 0.93729 0.92669 0.92302 0.92854 0.91281 0.90453 0.92959 0.90731 0.91086 0.88959 0.90471 0.86008 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.66 16 2 C -0.04 -0.63 6.49 -27.88 -0.18 -0.81 16 3 C 0.10 2.26 6.47 -82.10 -0.53 1.72 16 4 N -0.32 -7.14 12.45 33.86 0.42 -6.72 16 5 N -0.43 -9.73 4.08 -65.48 -0.27 -10.00 16 6 C 0.13 2.17 11.45 59.85 0.69 2.85 16 7 C 0.17 4.27 6.87 -84.14 -0.58 3.69 16 8 C -0.29 -7.38 9.76 -38.66 -0.38 -7.76 16 9 C 0.15 3.97 5.57 -106.82 -0.59 3.38 16 10 C -0.45 -11.38 9.02 -37.86 -0.34 -11.72 16 11 H 0.08 2.03 7.91 -52.48 -0.42 1.62 16 12 C 0.08 1.80 5.12 -17.34 -0.09 1.72 16 13 N -0.78 -19.08 10.96 55.55 0.61 -18.48 16 14 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 15 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 C -0.16 -3.95 8.58 -39.36 -0.34 -4.29 16 19 C -0.05 -1.26 10.02 -39.58 -0.40 -1.66 16 20 C -0.27 -6.42 6.11 -106.73 -0.65 -7.07 16 21 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 31 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 32 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 277.38 15.07 4.18 4.18 Total: -1.00 -29.09 277.38 -7.21 -36.31 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.10 Total: 3.72 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.03 Total: -21.62 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.76 Total: -35.19 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.09 -7.21 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148883677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.637 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds