Wall clock time and date at job start Mon Mar 30 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46887 * 2 1 4 4 N 1.30387 * 125.58711 * 270.03865 * 3 2 1 5 5 N 1.40014 * 109.79409 * 179.97438 * 4 3 2 6 6 C 1.46498 * 126.01566 * 180.02562 * 5 4 3 7 7 C 1.37463 * 107.97531 * 0.02562 * 5 4 3 8 8 C 1.38490 * 133.57858 * 179.97438 * 7 5 4 9 9 C 1.40439 * 119.51557 * 179.97438 * 8 7 5 10 10 C 1.41085 * 119.98142 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99667 * 24.85925 * 10 9 8 12 12 C 1.39959 * 120.00351 * 204.86356 * 10 9 8 13 13 N 1.30826 * 119.99617 * 17.99800 * 12 10 9 14 14 Si 1.86802 * 120.00188 * 198.00301 * 12 10 9 15 15 H 1.48503 * 109.46934 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47165 * 119.99544 * 14 12 10 17 17 H 1.48498 * 109.47171 * 239.99752 * 14 12 10 18 18 C 1.41311 * 120.04004 * 0.06013 * 9 8 7 19 19 C 1.35582 * 120.45246 * 359.97293 * 18 9 8 20 20 C 1.40751 * 120.19031 * 359.97438 * 19 18 9 21 21 H 1.09007 * 109.46872 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47037 * 299.99696 * 1 2 3 23 23 H 1.09000 * 109.47154 * 60.00541 * 1 2 3 24 24 H 1.08998 * 109.47015 * 239.99771 * 2 1 3 25 25 H 1.08998 * 109.47171 * 119.99996 * 2 1 3 26 26 H 1.09002 * 109.47134 * 89.97639 * 6 5 4 27 27 H 1.08999 * 109.47231 * 209.97733 * 6 5 4 28 28 H 1.08997 * 109.47144 * 329.97933 * 6 5 4 29 29 H 1.07996 * 120.24189 * 0.06937 * 8 7 5 30 30 H 0.97005 * 119.99749 * 180.02562 * 13 12 10 31 31 H 1.08005 * 119.77801 * 180.24828 * 18 9 8 32 32 H 1.08000 * 119.91065 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1364 -1.0603 5 7 2.7332 3.4068 -0.6793 6 6 3.1158 4.4928 -1.5851 7 6 2.7518 3.4558 0.6944 8 6 3.0987 4.4350 1.6101 9 6 3.0029 4.1622 2.9844 10 6 3.3533 5.1528 3.9260 11 1 3.3050 6.1971 3.6544 12 6 3.7634 4.7824 5.2118 13 7 4.1606 3.5577 5.4442 14 14 3.7436 6.0365 6.5961 15 1 3.2566 7.3396 6.0765 16 1 2.8413 5.5659 7.6776 17 1 5.1177 6.2012 7.1346 18 6 2.5565 2.8959 3.4249 19 6 2.2174 1.9368 2.5284 20 6 2.3069 2.1951 1.1477 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.2415 5.1040 -1.8092 27 1 3.8786 5.1101 -1.1105 28 1 3.5118 4.0725 -2.5094 29 1 3.4389 5.4019 1.2699 30 1 4.4445 3.3009 6.3355 31 1 2.4806 2.6920 4.4828 32 1 1.8769 0.9722 2.8747 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148883677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:13 Heat of formation + Delta-G solvation = 48.550718 kcal Electronic energy + Delta-G solvation = -15417.172748 eV Core-core repulsion = 12956.447294 eV Total energy + Delta-G solvation = -2460.725454 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80614 -38.04830 -35.60142 -35.12829 -32.44578 -31.27371 -30.48817 -27.36161 -26.91793 -24.25919 -22.93695 -22.35929 -20.25756 -19.07423 -17.55142 -17.12974 -16.80795 -16.17242 -15.42358 -15.13560 -14.89757 -14.59506 -14.28450 -13.98495 -13.56363 -13.36196 -13.15944 -12.90300 -12.73464 -12.53791 -12.31231 -12.03359 -11.96494 -11.77988 -11.40215 -11.16590 -10.96532 -10.46697 -9.21064 -8.79200 -8.41489 -6.42495 0.47911 1.20467 1.40806 1.44793 1.56536 1.85606 1.91332 2.19811 2.70633 3.66946 3.71200 4.07567 4.19830 4.29178 4.44062 4.53805 4.59694 4.67109 4.77244 4.83764 4.96999 5.00649 5.06669 5.13532 5.22684 5.33643 5.40508 5.64591 5.85490 6.00110 6.02841 6.25731 6.49414 6.57398 6.84045 6.91531 7.11442 8.22170 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034034 B = 0.007361 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.503523 B = 3802.847045 C = 4449.722795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C 0.106 3.894 4 N -0.328 5.328 5 N -0.441 5.441 6 C 0.118 3.882 7 C 0.152 3.848 8 C -0.311 4.311 9 C 0.125 3.875 10 C -0.478 4.478 11 H 0.081 0.919 12 C 0.039 3.961 13 N -0.806 5.806 14 Si 0.988 3.012 15 H -0.258 1.258 16 H -0.259 1.259 17 H -0.264 1.264 18 C -0.179 4.179 19 C -0.047 4.047 20 C -0.290 4.290 21 H 0.090 0.910 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.295 0.705 31 H 0.115 0.885 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -2.470 -3.295 5.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 C -0.067 4.067 4 N -0.143 5.143 5 N -0.231 5.231 6 C -0.023 4.023 7 C 0.039 3.961 8 C -0.336 4.336 9 C 0.120 3.880 10 C -0.507 4.507 11 H 0.099 0.901 12 C -0.179 4.179 13 N -0.431 5.431 14 Si 0.807 3.193 15 H -0.182 1.182 16 H -0.184 1.184 17 H -0.188 1.188 18 C -0.199 4.199 19 C -0.067 4.067 20 C -0.298 4.298 21 H 0.109 0.891 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.997 -2.480 -4.570 6.002 hybrid contribution 0.345 0.854 1.321 1.610 sum -2.653 -1.626 -3.250 4.499 Atomic orbital electron populations 1.21639 0.93207 1.03061 1.01360 1.20074 0.96974 0.86879 1.03920 1.22594 0.97461 0.97581 0.89074 1.76339 1.22079 0.91795 1.24095 1.48294 1.60599 1.11376 1.02842 1.21692 1.00774 0.86583 0.93246 1.18944 0.96740 0.96285 0.84162 1.19747 1.23231 0.98958 0.91676 1.17746 0.86320 0.92825 0.91102 1.19908 1.39419 0.94777 0.96565 0.90115 1.26868 0.91005 0.98154 1.01833 1.69868 1.27895 1.20555 1.24738 0.85074 0.79213 0.78408 0.76559 1.18185 1.18378 1.18849 1.20993 1.04954 0.94855 0.99105 1.20208 0.97639 0.98489 0.90375 1.18704 1.20848 0.95595 0.94664 0.89121 0.93531 0.93568 0.89509 0.89178 0.91317 0.90079 0.88829 0.88888 0.89369 0.86673 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.89 71.98 0.71 -2.78 16 2 C -0.04 -1.19 6.49 29.85 0.19 -1.00 16 3 C 0.11 4.44 6.47 43.49 0.28 4.72 16 4 N -0.33 -14.30 12.45 -46.80 -0.58 -14.88 16 5 N -0.44 -19.58 4.08 -361.07 -1.47 -21.06 16 6 C 0.12 3.89 11.45 127.77 1.46 5.35 16 7 C 0.15 7.65 6.87 39.04 0.27 7.91 16 8 C -0.31 -16.29 9.76 22.87 0.22 -16.07 16 9 C 0.13 6.80 5.57 -21.29 -0.12 6.68 16 10 C -0.48 -25.07 9.02 23.39 0.21 -24.85 16 11 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 12 C 0.04 1.88 5.12 85.26 0.44 2.32 16 13 N -0.81 -39.78 10.96 21.83 0.24 -39.54 16 14 Si 0.99 35.85 29.60 68.60 2.03 37.88 16 15 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 16 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 17 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 18 C -0.18 -9.28 8.58 22.41 0.19 -9.09 16 19 C -0.05 -2.19 10.02 22.27 0.22 -1.97 16 20 C -0.29 -13.92 6.11 -21.23 -0.13 -14.05 16 21 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.09 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.30 12.90 8.30 -92.70 -0.77 12.13 16 31 H 0.12 6.00 6.16 -2.91 -0.02 5.98 16 32 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -63.12 277.38 5.28 -57.84 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 1.11 Total: 22.59 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 3.96 Total: -42.83 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.82 Total: -75.48 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -63.12 5.28 -57.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148883677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.390 kcal (2) G-P(sol) polarization free energy of solvation -63.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds