Wall clock time and date at job start Mon Mar 30 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86301 * 109.47230 * 2 1 4 4 C 1.86296 * 109.47349 * 239.99905 * 2 1 3 5 5 O 1.63107 * 109.47245 * 119.99817 * 2 1 3 6 6 C 1.42902 * 113.99882 * 59.99987 * 5 2 1 7 7 C 1.50696 * 109.47164 * 270.00065 * 6 5 2 8 8 N 1.27940 * 120.00226 * 154.76182 * 7 6 5 9 9 Si 1.86804 * 120.00101 * 334.76368 * 7 6 5 10 10 H 1.48500 * 109.46940 * 5.04887 * 9 7 6 11 11 H 1.48503 * 109.46951 * 125.04898 * 9 7 6 12 12 H 1.48498 * 109.47106 * 245.05010 * 9 7 6 13 13 C 1.52998 * 109.46909 * 149.99919 * 6 5 2 14 14 H 1.08994 * 110.80129 * 178.28354 * 13 6 5 15 15 C 1.54814 * 110.90668 * 54.65796 * 13 6 5 16 16 C 1.54096 * 104.18522 * 220.91826 * 15 13 6 17 17 O 1.43743 * 107.29662 * 357.97265 * 16 15 13 18 18 C 1.44382 * 106.97478 * 26.50953 * 17 16 15 19 19 H 1.09007 * 109.47451 * 299.99882 * 1 2 3 20 20 H 1.08997 * 109.47165 * 60.00097 * 1 2 3 21 21 H 1.09009 * 109.47038 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47623 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.47001 * 300.00303 * 3 2 1 24 24 H 1.08997 * 109.46986 * 59.99704 * 3 2 1 25 25 H 1.09006 * 109.47301 * 300.00377 * 4 2 1 26 26 H 1.08997 * 109.46988 * 59.99890 * 4 2 1 27 27 H 1.08993 * 109.47794 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.46926 * 29.99877 * 6 5 2 29 29 H 0.96995 * 120.00359 * 179.97438 * 8 7 6 30 30 H 1.08997 * 110.48770 * 339.59198 * 15 13 6 31 31 H 1.08997 * 110.48328 * 102.10941 * 15 13 6 32 32 H 1.09009 * 109.87852 * 117.39228 * 16 15 13 33 33 H 1.08999 * 109.87780 * 238.39448 * 16 15 13 34 34 H 1.09003 * 110.61606 * 201.43712 * 18 17 16 35 35 H 1.09001 * 110.61541 * 78.44794 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 8 2.4067 -0.7688 1.3318 6 6 1.9850 -2.1307 1.4295 7 6 0.6767 -2.1993 2.1743 8 7 -0.1191 -3.1821 1.9802 9 14 0.2169 -0.8494 3.3809 10 1 1.2400 0.2259 3.3339 11 1 -1.1083 -0.2883 3.0144 12 1 0.1535 -1.4128 4.7534 13 6 3.0434 -2.9395 2.1822 14 1 2.7294 -3.9770 2.2958 15 6 3.3505 -2.3014 3.5589 16 6 4.8807 -2.4201 3.6973 17 8 5.3633 -3.1063 2.5300 18 6 4.4170 -2.8514 1.4698 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 3.5739 1.7565 0.0005 23 1 2.1206 2.2703 -0.8900 24 1 2.1206 2.2703 0.8899 25 1 2.1206 -1.9059 -1.5211 26 1 2.1207 -0.3644 -2.4110 27 1 3.5739 -0.8779 -1.5214 28 1 1.8557 -2.5437 0.4291 29 1 -0.9610 -3.2264 2.4598 30 1 3.0465 -1.2547 3.5706 31 1 2.8495 -2.8522 4.3549 32 1 5.3260 -1.4268 3.7538 33 1 5.1287 -2.9889 4.5934 34 1 4.4963 -3.6124 0.6934 35 1 4.5690 -1.8567 1.0506 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203415991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:53 Heat of formation + Delta-G solvation = -107.053612 kcal Electronic energy + Delta-G solvation = -15694.092483 eV Core-core repulsion = 13236.568556 eV Total energy + Delta-G solvation = -2457.523927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.80335 -38.53323 -36.02355 -33.20921 -30.43654 -29.67175 -28.72015 -28.56647 -27.30865 -23.47315 -22.53514 -20.65291 -18.75656 -17.44710 -17.17605 -16.76545 -16.40638 -15.70296 -14.95148 -14.71598 -14.44955 -14.40021 -14.00429 -13.97169 -13.71768 -13.58399 -13.34948 -13.20215 -13.08318 -12.73787 -12.53234 -12.33729 -12.05848 -11.91137 -11.83664 -11.59023 -11.21807 -10.83634 -10.62118 -10.50410 -9.93100 0.61000 0.95809 1.25249 1.38891 1.58337 1.75138 1.81630 1.94483 2.33645 3.03910 3.25751 3.61564 3.86010 3.97796 4.18496 4.23562 4.41954 4.44992 4.59093 4.60197 4.64727 4.65912 4.67677 4.68585 4.70356 4.81782 4.92725 4.94818 5.00324 5.10657 5.33222 5.38543 5.47417 5.52632 5.99369 6.67207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.517 4.517 2 Si 1.245 2.755 3 C -0.466 4.466 4 C -0.506 4.506 5 O -0.611 6.611 6 C 0.158 3.842 7 C -0.026 4.026 8 N -0.619 5.619 9 Si 0.906 3.094 10 H -0.208 1.208 11 H -0.243 1.243 12 H -0.242 1.242 13 C -0.112 4.112 14 H 0.102 0.898 15 C -0.158 4.158 16 C 0.050 3.950 17 O -0.378 6.378 18 C 0.053 3.947 19 H 0.068 0.932 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.342 0.658 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 1.691 -0.009 2.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.618 4.618 2 Si 1.383 2.617 3 C -0.572 4.572 4 C -0.609 4.609 5 O -0.569 6.569 6 C 0.100 3.900 7 C -0.275 4.275 8 N -0.233 5.233 9 Si 0.722 3.278 10 H -0.129 1.129 11 H -0.167 1.167 12 H -0.165 1.165 13 C -0.131 4.131 14 H 0.120 0.880 15 C -0.195 4.195 16 C -0.027 4.027 17 O -0.297 6.297 18 C -0.023 4.023 19 H 0.087 0.913 20 H 0.097 0.903 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.160 0.840 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.058 1.364 0.195 1.737 hybrid contribution -1.013 0.411 -0.036 1.093 sum -2.070 1.775 0.159 2.732 Atomic orbital electron populations 1.27117 1.25057 1.04778 1.04873 0.77346 0.63571 0.64815 0.55972 1.26285 1.07052 1.18980 1.04893 1.26922 1.07064 1.08763 1.18136 1.85478 1.78352 1.26862 1.66237 1.20289 0.89705 0.81008 0.99007 1.31039 0.96501 1.00115 0.99866 1.68029 1.07107 1.23800 1.24385 0.85910 0.82468 0.80604 0.78861 1.12944 1.16671 1.16522 1.22853 0.95156 0.99642 0.95477 0.87958 1.23038 0.96683 1.03135 0.96692 1.23113 0.92939 0.97375 0.89248 1.88882 1.47337 1.73095 1.20357 1.23591 0.85839 1.02093 0.90816 0.91252 0.90266 0.91042 0.90550 0.90410 0.90751 0.91186 0.90647 0.90680 0.89126 0.84042 0.88929 0.90651 0.92069 0.89996 0.88957 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 0.64 7.43 101.05 0.75 1.39 16 2 Si 1.25 -2.78 11.95 -169.99 -2.03 -4.81 16 3 C -0.47 0.78 8.65 101.05 0.87 1.65 16 4 C -0.51 0.92 8.56 101.05 0.87 1.78 16 5 O -0.61 0.72 4.95 -35.23 -0.17 0.55 16 6 C 0.16 -0.14 1.85 -27.89 -0.05 -0.20 16 7 C -0.03 0.01 3.35 -13.90 -0.05 -0.04 16 8 N -0.62 -0.10 13.82 56.23 0.78 0.68 16 9 Si 0.91 -0.17 23.09 -169.99 -3.92 -4.10 16 10 H -0.21 0.13 6.86 56.52 0.39 0.52 16 11 H -0.24 -0.06 7.11 56.52 0.40 0.34 16 12 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 13 C -0.11 0.05 3.02 -88.61 -0.27 -0.21 16 14 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 15 C -0.16 0.08 5.32 -25.20 -0.13 -0.06 16 16 C 0.05 0.02 7.70 37.73 0.29 0.31 16 17 O -0.38 -1.02 11.52 -35.23 -0.41 -1.42 16 18 C 0.05 0.01 7.12 38.21 0.27 0.28 16 19 H 0.07 -0.07 6.41 -51.93 -0.33 -0.40 16 20 H 0.08 -0.13 7.96 -51.93 -0.41 -0.55 16 21 H 0.07 -0.06 7.24 -51.92 -0.38 -0.44 16 22 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 23 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 25 H 0.07 -0.12 7.10 -51.93 -0.37 -0.49 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.09 -0.18 6.15 -51.93 -0.32 -0.50 16 29 H 0.34 -0.42 8.23 -40.82 -0.34 -0.76 16 30 H 0.09 -0.07 5.53 -51.93 -0.29 -0.36 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.06 -0.01 8.14 -51.92 -0.42 -0.43 16 33 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.04 7.34 -51.93 -0.38 -0.42 16 LS Contribution 275.90 15.07 4.16 4.16 Total: 0.00 -3.00 275.90 -4.85 -7.85 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -5.81 Total: -7.82 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 2.55 Total: 4.92 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: 0.78 Total: 0.68 kcal Atomic # 8 Polarization: -0.29 SS G_CDS: -0.58 Total: -0.87 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: -5.96 Total: -8.91 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -3.00 -4.85 -7.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203415991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.200 kcal (2) G-P(sol) polarization free energy of solvation -3.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds