Wall clock time and date at job start Mon Mar 30 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86301 * 109.47230 * 2 1 4 4 C 1.86296 * 109.47349 * 239.99905 * 2 1 3 5 5 O 1.63107 * 109.47245 * 119.99817 * 2 1 3 6 6 C 1.42902 * 113.99882 * 59.99987 * 5 2 1 7 7 C 1.50696 * 109.47164 * 270.00065 * 6 5 2 8 8 N 1.27940 * 120.00226 * 154.76182 * 7 6 5 9 9 Si 1.86804 * 120.00101 * 334.76368 * 7 6 5 10 10 H 1.48500 * 109.46940 * 5.04887 * 9 7 6 11 11 H 1.48503 * 109.46951 * 125.04898 * 9 7 6 12 12 H 1.48498 * 109.47106 * 245.05010 * 9 7 6 13 13 C 1.52998 * 109.46909 * 149.99919 * 6 5 2 14 14 H 1.08994 * 110.80129 * 178.28354 * 13 6 5 15 15 C 1.54814 * 110.90668 * 54.65796 * 13 6 5 16 16 C 1.54096 * 104.18522 * 220.91826 * 15 13 6 17 17 O 1.43743 * 107.29662 * 357.97265 * 16 15 13 18 18 C 1.44382 * 106.97478 * 26.50953 * 17 16 15 19 19 H 1.09007 * 109.47451 * 299.99882 * 1 2 3 20 20 H 1.08997 * 109.47165 * 60.00097 * 1 2 3 21 21 H 1.09009 * 109.47038 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47623 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.47001 * 300.00303 * 3 2 1 24 24 H 1.08997 * 109.46986 * 59.99704 * 3 2 1 25 25 H 1.09006 * 109.47301 * 300.00377 * 4 2 1 26 26 H 1.08997 * 109.46988 * 59.99890 * 4 2 1 27 27 H 1.08993 * 109.47794 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.46926 * 29.99877 * 6 5 2 29 29 H 0.96995 * 120.00359 * 179.97438 * 8 7 6 30 30 H 1.08997 * 110.48770 * 339.59198 * 15 13 6 31 31 H 1.08997 * 110.48328 * 102.10941 * 15 13 6 32 32 H 1.09009 * 109.87852 * 117.39228 * 16 15 13 33 33 H 1.08999 * 109.87780 * 238.39448 * 16 15 13 34 34 H 1.09003 * 110.61606 * 201.43712 * 18 17 16 35 35 H 1.09001 * 110.61541 * 78.44794 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 8 2.4067 -0.7688 1.3318 6 6 1.9850 -2.1307 1.4295 7 6 0.6767 -2.1993 2.1743 8 7 -0.1191 -3.1821 1.9802 9 14 0.2169 -0.8494 3.3809 10 1 1.2400 0.2259 3.3339 11 1 -1.1083 -0.2883 3.0144 12 1 0.1535 -1.4128 4.7534 13 6 3.0434 -2.9395 2.1822 14 1 2.7294 -3.9770 2.2958 15 6 3.3505 -2.3014 3.5589 16 6 4.8807 -2.4201 3.6973 17 8 5.3633 -3.1063 2.5300 18 6 4.4170 -2.8514 1.4698 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 3.5739 1.7565 0.0005 23 1 2.1206 2.2703 -0.8900 24 1 2.1206 2.2703 0.8899 25 1 2.1206 -1.9059 -1.5211 26 1 2.1207 -0.3644 -2.4110 27 1 3.5739 -0.8779 -1.5214 28 1 1.8557 -2.5437 0.4291 29 1 -0.9610 -3.2264 2.4598 30 1 3.0465 -1.2547 3.5706 31 1 2.8495 -2.8522 4.3549 32 1 5.3260 -1.4268 3.7538 33 1 5.1287 -2.9889 4.5934 34 1 4.4963 -3.6124 0.6934 35 1 4.5690 -1.8567 1.0506 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203415991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:53 Heat of formation + Delta-G solvation = -99.449825 kcal Electronic energy + Delta-G solvation = -15693.762758 eV Core-core repulsion = 13236.568556 eV Total energy + Delta-G solvation = -2457.194202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.77829 -38.50727 -35.97489 -33.20169 -30.40576 -29.52851 -28.59413 -28.41389 -27.25535 -23.45638 -22.50719 -20.59645 -18.68989 -17.42048 -17.16119 -16.71595 -16.37445 -15.70684 -14.90898 -14.65794 -14.38360 -14.32010 -13.90915 -13.84570 -13.64515 -13.48528 -13.19149 -13.06542 -13.01397 -12.67522 -12.45722 -12.27821 -12.02830 -11.86410 -11.78386 -11.54375 -11.15400 -10.70197 -10.57018 -10.47542 -9.89281 0.63862 0.98976 1.38646 1.40553 1.60578 1.85063 1.92508 2.07828 2.47464 3.06092 3.32235 3.67814 3.92112 4.02891 4.27293 4.27933 4.48154 4.50233 4.68488 4.72386 4.74115 4.80503 4.81919 4.82939 4.83868 4.88531 4.94466 4.98826 5.07115 5.16738 5.42173 5.50592 5.62844 5.67176 5.98874 6.73919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.528 4.528 2 Si 1.279 2.721 3 C -0.476 4.476 4 C -0.513 4.513 5 O -0.616 6.616 6 C 0.155 3.845 7 C -0.021 4.021 8 N -0.631 5.631 9 Si 0.907 3.093 10 H -0.201 1.201 11 H -0.251 1.251 12 H -0.248 1.248 13 C -0.109 4.109 14 H 0.101 0.899 15 C -0.159 4.159 16 C 0.045 3.955 17 O -0.405 6.405 18 C 0.048 3.952 19 H 0.065 0.935 20 H 0.082 0.918 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.348 0.652 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 1.792 -0.248 2.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 Si 1.415 2.585 3 C -0.582 4.582 4 C -0.615 4.615 5 O -0.574 6.574 6 C 0.097 3.903 7 C -0.270 4.270 8 N -0.246 5.246 9 Si 0.723 3.277 10 H -0.122 1.122 11 H -0.175 1.175 12 H -0.172 1.172 13 C -0.128 4.128 14 H 0.119 0.881 15 C -0.196 4.196 16 C -0.032 4.032 17 O -0.324 6.324 18 C -0.028 4.028 19 H 0.084 0.916 20 H 0.101 0.899 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.166 0.834 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.070 1.474 -0.044 1.822 hybrid contribution -1.027 0.392 0.041 1.100 sum -2.097 1.866 -0.004 2.807 Atomic orbital electron populations 1.27263 1.26133 1.04533 1.04932 0.76772 0.62389 0.64040 0.55346 1.26395 1.07120 1.19593 1.05060 1.26988 1.07191 1.08921 1.18391 1.85470 1.78402 1.26780 1.66773 1.20351 0.89247 0.81174 0.99512 1.31049 0.96617 0.99763 0.99621 1.68024 1.07625 1.24072 1.24844 0.85886 0.82277 0.80933 0.78590 1.12170 1.17515 1.17168 1.22813 0.94943 0.99669 0.95419 0.88066 1.23063 0.96109 1.03457 0.97001 1.23226 0.93560 0.97488 0.88899 1.88846 1.48487 1.73632 1.21449 1.23732 0.85704 1.02752 0.90592 0.91584 0.89866 0.91426 0.90577 0.89921 0.90976 0.91088 0.90540 0.90579 0.87940 0.83406 0.88640 0.90019 0.91754 0.89544 0.88133 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 1.34 7.43 113.37 0.84 2.19 16 2 Si 1.28 -6.14 11.95 68.60 0.82 -5.32 16 3 C -0.48 1.71 8.65 113.37 0.98 2.69 16 4 C -0.51 2.12 8.56 113.37 0.97 3.09 16 5 O -0.62 1.71 4.95 -148.98 -0.74 0.98 16 6 C 0.16 -0.34 1.85 29.85 0.06 -0.28 16 7 C -0.02 0.02 3.35 88.67 0.30 0.31 16 8 N -0.63 -0.16 13.82 24.11 0.33 0.18 16 9 Si 0.91 -0.27 23.09 68.60 1.58 1.31 16 10 H -0.20 0.31 6.86 99.48 0.68 0.99 16 11 H -0.25 -0.24 7.11 99.48 0.71 0.46 16 12 H -0.25 -0.17 7.11 99.48 0.71 0.54 16 13 C -0.11 0.13 3.02 -9.49 -0.03 0.10 16 14 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 15 C -0.16 0.17 5.32 31.58 0.17 0.34 16 16 C 0.04 0.05 7.70 72.35 0.56 0.60 16 17 O -0.40 -2.29 11.52 -148.98 -1.72 -4.01 16 18 C 0.05 0.01 7.12 72.66 0.52 0.53 16 19 H 0.07 -0.12 6.41 -2.38 -0.02 -0.14 16 20 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 21 H 0.07 -0.11 7.24 -2.38 -0.02 -0.13 16 22 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 23 H 0.08 -0.38 7.96 -2.38 -0.02 -0.40 16 24 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 25 H 0.07 -0.30 7.10 -2.38 -0.02 -0.31 16 26 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.10 -0.48 6.15 -2.39 -0.01 -0.49 16 29 H 0.35 -0.80 8.23 -92.71 -0.76 -1.56 16 30 H 0.10 -0.17 5.53 -2.39 -0.01 -0.18 16 31 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.08 -0.11 7.34 -2.39 -0.02 -0.13 16 Total: 0.00 -6.48 275.90 5.67 -0.81 By element: Atomic # 1 Polarization: -4.54 SS G_CDS: 1.03 Total: -3.51 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 4.36 Total: 9.57 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: 0.33 Total: 0.18 kcal Atomic # 8 Polarization: -0.58 SS G_CDS: -2.45 Total: -3.03 kcal Atomic # 14 Polarization: -6.42 SS G_CDS: 2.40 Total: -4.01 kcal Total: -6.48 5.67 -0.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203415991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.639 kcal (2) G-P(sol) polarization free energy of solvation -6.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds