Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 C 1.52997 * 109.47457 * 120.00329 * 2 1 3 5 5 C 1.53002 * 109.46817 * 60.00169 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 S 1.81396 * 109.47360 * 180.02562 * 7 6 5 10 10 O 1.42095 * 109.47172 * 298.61318 * 9 7 6 11 11 C 1.81398 * 103.00046 * 55.00011 * 9 7 6 12 12 C 1.50699 * 109.47310 * 179.97438 * 11 9 7 13 13 H 1.08003 * 119.99952 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00011 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00021 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46807 * 90.00479 * 16 14 12 18 18 H 1.48494 * 109.47198 * 210.00324 * 16 14 12 19 19 H 1.48500 * 109.47072 * 330.00578 * 16 14 12 20 20 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 21 21 H 1.09004 * 109.46976 * 299.99386 * 1 2 3 22 22 H 1.09000 * 109.47380 * 59.99511 * 1 2 3 23 23 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47194 * 299.99651 * 4 2 1 25 25 H 1.09002 * 109.46695 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 27 27 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 28 28 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 29 29 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46972 * 300.00542 * 11 9 7 31 31 H 1.09000 * 109.47005 * 60.00022 * 11 9 7 32 32 H 0.97005 * 119.99820 * 179.97438 * 15 14 12 33 33 H 1.09000 * 109.47486 * 180.02562 * 20 7 6 34 34 H 1.09002 * 109.46716 * 60.00091 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2494 9 16 2.1340 -3.0190 -2.7307 10 8 3.5546 -2.9914 -2.7474 11 6 1.5653 -4.7230 -2.4783 12 6 1.9957 -5.5742 -3.6450 13 1 2.5557 -5.1342 -4.4570 14 6 1.6754 -6.9149 -3.6755 15 7 0.9939 -7.4508 -2.6865 16 14 2.2094 -7.9702 -5.1214 17 1 3.5475 -8.5508 -4.8428 18 1 1.2273 -9.0653 -5.3244 19 1 2.2781 -7.1335 -6.3462 20 6 2.0399 -0.7211 -1.2494 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6768 -0.2075 2.1391 25 1 3.1301 -0.7216 1.2488 26 1 0.4402 -2.1638 1.2491 27 1 1.8939 -2.6778 2.1387 28 1 3.1301 -2.8849 -0.0004 29 1 1.6764 -3.9125 -0.0006 30 1 1.9991 -5.1185 -1.5599 31 1 0.4781 -4.7355 -2.4014 32 1 0.7682 -8.3940 -2.7081 33 1 1.6761 -0.2071 -2.1391 34 1 3.1299 -0.7211 -1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203526607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -72.465828 kcal Electronic energy + Delta-G solvation = -14609.484512 eV Core-core repulsion = 12246.662588 eV Total energy + Delta-G solvation = -2362.821925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.71239 -34.52817 -33.11914 -31.82138 -30.58633 -28.58990 -26.63342 -23.35773 -22.22548 -21.90986 -18.41229 -16.94966 -16.39236 -15.54874 -14.89039 -14.51922 -14.26687 -13.72316 -13.52841 -13.19241 -12.86340 -12.47861 -12.24931 -12.12320 -11.59552 -11.37974 -11.29319 -11.01207 -10.90331 -10.82120 -10.70111 -10.43119 -10.18181 -10.00782 -9.81912 -9.51585 -8.59248 -8.54176 -7.08764 -6.15513 -4.21363 2.60823 3.27727 3.33683 3.37960 3.84854 4.36638 4.75077 4.85906 4.91098 5.03357 5.22271 5.37449 5.43896 5.50912 5.56755 5.69905 5.79166 5.87369 5.94643 5.95996 6.08895 6.17489 6.30850 6.36416 6.38440 6.48499 6.54070 6.70388 7.08811 7.17011 7.71678 8.05253 8.82918 9.43075 10.96359 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048840 B = 0.006643 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.159969 B = 4213.786227 C = 4431.037385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.415 4.415 8 H 0.114 0.886 9 S 1.192 4.808 10 O -0.867 6.867 11 C -0.251 4.251 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.087 4.087 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 13.101 4.181 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.530 4.530 8 H 0.132 0.868 9 S 1.394 4.606 10 O -0.862 6.862 11 C -0.391 4.391 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.125 4.125 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.504 13.358 3.491 14.244 hybrid contribution 1.022 -1.716 1.332 2.401 sum -2.482 11.642 4.823 12.844 Atomic orbital electron populations 1.21932 0.95363 1.02367 1.01018 1.21051 0.95955 0.98401 0.95199 0.91754 1.21542 1.00346 0.95980 0.97186 1.21534 1.00826 0.95315 0.97683 1.21564 1.00634 0.99124 0.93692 1.27704 1.07930 1.03572 1.13794 0.86787 1.69571 0.94671 0.95738 1.00595 1.93004 1.26997 1.86038 1.80196 1.24882 1.03612 1.07896 1.02752 1.20487 1.36387 0.93975 1.04443 0.91860 1.24977 0.94576 0.97751 0.96379 1.69969 1.38275 1.12878 1.31426 0.86472 0.78485 0.79958 0.82495 1.20501 1.20937 1.19317 1.21181 1.00552 0.93193 0.97554 0.93403 0.92717 0.91661 0.92599 0.92438 0.91687 0.92740 0.92213 0.91111 0.94000 0.91220 0.92702 0.91366 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.50 37.16 0.32 -1.26 16 2 C -0.09 -1.03 3.19 -90.62 -0.29 -1.32 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.41 5.45 -26.73 -0.15 -1.56 16 5 C -0.12 -1.60 5.65 -26.73 -0.15 -1.75 16 6 C -0.11 -1.92 4.95 -26.73 -0.13 -2.05 16 7 C -0.42 -6.52 2.44 -26.73 -0.07 -6.58 16 8 H 0.11 1.55 6.43 -51.92 -0.33 1.22 16 9 S 1.19 23.23 12.59 -107.50 -1.35 21.88 16 10 O -0.87 -21.97 18.13 -35.23 -0.64 -22.61 16 11 C -0.25 -6.15 5.08 36.00 0.18 -5.97 16 12 C -0.51 -14.34 9.13 -34.44 -0.31 -14.66 16 13 H 0.06 1.74 7.71 -52.48 -0.40 1.33 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 15 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.09 -1.20 4.73 -26.73 -0.13 -1.33 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.32 6.51 -51.93 -0.34 0.99 16 30 H 0.04 1.13 6.90 -51.92 -0.36 0.77 16 31 H 0.07 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -33.69 277.96 -8.29 -41.98 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.38 Total: -1.93 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: -0.82 Total: -34.68 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.64 Total: -22.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 23.23 SS G_CDS: -1.35 Total: 21.88 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.69 -8.29 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.481 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds