Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 C 1.52997 * 109.47457 * 120.00329 * 2 1 3 5 5 C 1.53002 * 109.46817 * 60.00169 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 S 1.81396 * 109.47360 * 180.02562 * 7 6 5 10 10 O 1.42095 * 109.47172 * 298.61318 * 9 7 6 11 11 C 1.81398 * 103.00046 * 55.00011 * 9 7 6 12 12 C 1.50699 * 109.47310 * 179.97438 * 11 9 7 13 13 H 1.08003 * 119.99952 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00011 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00021 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46807 * 90.00479 * 16 14 12 18 18 H 1.48494 * 109.47198 * 210.00324 * 16 14 12 19 19 H 1.48500 * 109.47072 * 330.00578 * 16 14 12 20 20 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 21 21 H 1.09004 * 109.46976 * 299.99386 * 1 2 3 22 22 H 1.09000 * 109.47380 * 59.99511 * 1 2 3 23 23 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47194 * 299.99651 * 4 2 1 25 25 H 1.09002 * 109.46695 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 27 27 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 28 28 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 29 29 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46972 * 300.00542 * 11 9 7 31 31 H 1.09000 * 109.47005 * 60.00022 * 11 9 7 32 32 H 0.97005 * 119.99820 * 179.97438 * 15 14 12 33 33 H 1.09000 * 109.47486 * 180.02562 * 20 7 6 34 34 H 1.09002 * 109.46716 * 60.00091 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2494 9 16 2.1340 -3.0190 -2.7307 10 8 3.5546 -2.9914 -2.7474 11 6 1.5653 -4.7230 -2.4783 12 6 1.9957 -5.5742 -3.6450 13 1 2.5557 -5.1342 -4.4570 14 6 1.6754 -6.9149 -3.6755 15 7 0.9939 -7.4508 -2.6865 16 14 2.2094 -7.9702 -5.1214 17 1 3.5475 -8.5508 -4.8428 18 1 1.2273 -9.0653 -5.3244 19 1 2.2781 -7.1335 -6.3462 20 6 2.0399 -0.7211 -1.2494 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6768 -0.2075 2.1391 25 1 3.1301 -0.7216 1.2488 26 1 0.4402 -2.1638 1.2491 27 1 1.8939 -2.6778 2.1387 28 1 3.1301 -2.8849 -0.0004 29 1 1.6764 -3.9125 -0.0006 30 1 1.9991 -5.1185 -1.5599 31 1 0.4781 -4.7355 -2.4014 32 1 0.7682 -8.3940 -2.7081 33 1 1.6761 -0.2071 -2.1391 34 1 3.1299 -0.7211 -1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203526607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -95.023561 kcal Electronic energy + Delta-G solvation = -14610.462689 eV Core-core repulsion = 12246.662588 eV Total energy + Delta-G solvation = -2363.800102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83710 -36.43336 -35.23948 -32.98971 -31.76259 -30.63253 -27.60083 -25.31081 -23.53821 -23.13800 -19.50598 -18.78209 -18.26702 -16.94961 -16.71075 -15.88148 -15.52642 -15.27532 -14.82361 -14.61723 -14.54245 -14.04634 -13.79185 -13.39158 -13.15355 -12.99502 -12.71710 -12.58663 -12.45075 -12.23718 -11.94205 -11.89021 -11.66045 -11.56017 -11.14030 -10.93258 -10.69123 -10.29980 -8.83341 -8.30184 -6.43515 0.98282 1.37859 1.39651 1.51581 2.15249 2.36421 3.01689 3.18977 3.70156 3.72686 3.98186 4.23440 4.28582 4.39161 4.43932 4.58275 4.63977 4.83056 4.91968 4.98300 5.04613 5.06877 5.08525 5.13942 5.17904 5.21935 5.34781 5.40982 5.47963 5.55082 5.67730 5.95575 6.70519 7.25083 8.82280 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048840 B = 0.006643 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.159969 B = 4213.786227 C = 4431.037385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.401 4.401 8 H 0.148 0.852 9 S 1.254 4.746 10 O -0.927 6.927 11 C -0.263 4.263 12 C -0.539 4.539 13 H 0.062 0.938 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.963 3.037 17 H -0.282 1.282 18 H -0.271 1.271 19 H -0.253 1.253 20 C -0.090 4.090 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.004 0.996 31 H 0.073 0.927 32 H 0.267 0.733 33 H 0.097 0.903 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 14.982 4.013 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.519 4.519 8 H 0.166 0.834 9 S 1.459 4.541 10 O -0.923 6.923 11 C -0.402 4.402 12 C -0.578 4.578 13 H 0.080 0.920 14 C -0.189 4.189 15 N -0.561 5.561 16 Si 0.786 3.214 17 H -0.208 1.208 18 H -0.196 1.196 19 H -0.177 1.177 20 C -0.129 4.129 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.798 15.208 3.288 16.283 hybrid contribution 1.409 -2.198 1.507 3.014 sum -3.388 13.011 4.795 14.274 Atomic orbital electron populations 1.21938 0.93753 1.02330 1.02632 1.21063 0.97199 0.98802 0.93131 0.89784 1.21579 0.99636 0.95061 0.98869 1.21525 1.01759 0.96022 0.95621 1.21545 0.98712 0.98615 0.96516 1.27577 1.09687 1.04144 1.10459 0.83409 1.68688 0.91826 0.91312 1.02270 1.92887 1.30638 1.85645 1.83108 1.24974 1.03738 1.11517 0.99927 1.20944 1.36328 0.95071 1.05408 0.92010 1.25912 0.94540 0.99225 0.99206 1.70076 1.39382 1.13363 1.33296 0.85479 0.77880 0.78453 0.79567 1.20848 1.19621 1.17683 1.21298 0.99178 0.91883 1.00528 0.91902 0.91196 0.92430 0.90113 0.93798 0.89975 0.92608 0.95342 0.93593 0.97778 0.90866 0.92435 0.88477 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.50 71.98 0.61 -1.85 16 2 C -0.08 -1.66 3.19 -10.79 -0.03 -1.70 16 3 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -2.56 5.45 30.59 0.17 -2.39 16 5 C -0.11 -2.91 5.65 30.60 0.17 -2.74 16 6 C -0.12 -4.02 4.95 30.59 0.15 -3.87 16 7 C -0.40 -12.11 2.44 30.59 0.07 -12.04 16 8 H 0.15 3.59 6.43 -2.39 -0.02 3.58 16 9 S 1.25 49.37 12.59 -56.49 -0.71 48.66 16 10 O -0.93 -48.29 18.13 -148.98 -2.70 -50.99 16 11 C -0.26 -13.37 5.08 71.24 0.36 -13.01 16 12 C -0.54 -30.83 9.13 25.60 0.23 -30.60 16 13 H 0.06 3.46 7.71 -2.91 -0.02 3.43 16 14 C 0.01 0.67 5.46 84.65 0.46 1.13 16 15 N -0.92 -55.27 13.29 21.45 0.28 -54.98 16 16 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 20 C -0.09 -2.31 4.73 30.60 0.14 -2.16 16 21 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 1.04 4.81 -2.39 -0.01 1.03 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.90 6.43 -2.39 -0.02 1.89 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.80 6.51 -2.39 -0.02 1.78 16 30 H 0.00 0.21 6.90 -2.39 -0.02 0.20 16 31 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -75.22 277.96 2.30 -72.92 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.06 Total: 7.31 kcal Atomic # 6 Polarization: -71.57 SS G_CDS: 2.35 Total: -69.22 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.98 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.70 Total: -50.99 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 49.37 SS G_CDS: -0.71 Total: 48.66 kcal Total: -75.22 2.30 -72.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.103 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds