Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47332 * 2 1 4 4 C 1.53004 * 109.47080 * 120.00041 * 2 1 3 5 5 C 1.52998 * 109.47080 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.47068 * 300.00098 * 5 4 2 7 7 C 1.52996 * 109.47350 * 59.99776 * 6 5 4 8 8 H 1.09008 * 109.46897 * 59.99818 * 7 6 5 9 9 S 1.81397 * 109.47385 * 180.02562 * 7 6 5 10 10 O 1.42098 * 109.47141 * 188.61254 * 9 7 6 11 11 C 1.81400 * 102.99717 * 305.00219 * 9 7 6 12 12 C 1.50706 * 109.47144 * 179.97438 * 11 9 7 13 13 H 1.07998 * 119.99501 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00436 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00481 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 359.72901 * 14 12 11 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 C 1.52997 * 109.46996 * 239.99749 * 2 1 3 21 21 H 1.08999 * 109.47266 * 299.99959 * 1 2 3 22 22 H 1.09003 * 109.47222 * 60.00027 * 1 2 3 23 23 H 1.09005 * 109.47222 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47072 * 59.99800 * 4 2 1 25 25 H 1.08999 * 109.47070 * 300.00120 * 4 2 1 26 26 H 1.09003 * 109.47222 * 179.97438 * 5 4 2 27 27 H 1.09005 * 109.47222 * 59.99694 * 5 4 2 28 28 H 1.09005 * 109.46769 * 299.99873 * 6 5 4 29 29 H 1.08998 * 109.47227 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.47407 * 60.00167 * 11 9 7 31 31 H 1.09001 * 109.47044 * 299.99562 * 11 9 7 32 32 H 0.96999 * 120.00235 * 179.72806 * 15 14 12 33 33 H 1.09003 * 109.46952 * 60.00058 * 20 2 1 34 34 H 1.08999 * 109.47784 * 300.00228 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2489 8 1 3.9334 0.3075 -1.2487 9 16 4.1751 -1.5755 -2.7301 10 8 3.8723 -0.7999 -3.8816 11 6 5.9712 -1.6078 -2.4779 12 6 6.6299 -2.2988 -3.6440 13 1 6.0281 -2.6807 -4.4554 14 6 8.0007 -2.4434 -3.6750 15 7 8.5754 -3.0469 -4.6924 16 14 9.0422 -1.7761 -2.2752 17 1 9.4267 -0.3724 -2.5700 18 1 8.2616 -1.8208 -1.0126 19 1 10.2660 -2.6045 -2.1303 20 6 2.0399 -0.7213 -1.2492 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6766 -1.7489 1.2493 25 1 1.6766 -0.2075 2.1392 26 1 3.9333 -1.2342 2.1398 27 1 3.9330 0.3071 1.2498 28 1 3.7175 -2.4694 0.0001 29 1 5.1705 -1.4416 0.0007 30 1 6.1996 -2.1485 -1.5594 31 1 6.3458 -0.5870 -2.4013 32 1 9.5401 -3.1452 -4.7161 33 1 1.6766 -0.2075 -2.1392 34 1 1.6766 -1.7490 -1.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203526610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -73.290796 kcal Electronic energy + Delta-G solvation = -14465.939247 eV Core-core repulsion = 12103.081548 eV Total energy + Delta-G solvation = -2362.857698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.50433 -34.74241 -33.06485 -32.53775 -30.67882 -29.39572 -26.34799 -23.12352 -22.09170 -21.32887 -19.72627 -17.04564 -16.57628 -15.36906 -14.83140 -14.47712 -14.36802 -14.20728 -13.66216 -13.32099 -13.10710 -12.65756 -12.36548 -12.30905 -11.82047 -11.53049 -11.42288 -11.16321 -11.02447 -10.88083 -10.73043 -10.46110 -10.29665 -10.09794 -9.93759 -9.54902 -8.80103 -8.69097 -7.28829 -6.16844 -4.20017 2.38504 3.22329 3.30221 3.30833 3.66358 4.34014 4.58725 4.70403 4.86190 4.89657 5.14705 5.20515 5.25706 5.43282 5.52194 5.59354 5.66391 5.72759 5.77655 5.82764 5.97306 6.04165 6.16557 6.25385 6.27421 6.34832 6.38640 6.53641 6.59672 6.71657 7.50775 8.24004 8.81923 9.41800 10.95009 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040870 B = 0.007283 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.929424 B = 3843.787563 C = 4374.768843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.094 4.094 7 C -0.423 4.423 8 H 0.079 0.921 9 S 1.225 4.775 10 O -0.861 6.861 11 C -0.301 4.301 12 C -0.513 4.513 13 H 0.080 0.920 14 C 0.080 3.920 15 N -0.892 5.892 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.263 1.263 19 H -0.284 1.284 20 C -0.084 4.084 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.062 0.938 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 1.374 13.946 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.133 4.133 7 C -0.538 4.538 8 H 0.097 0.903 9 S 1.426 4.574 10 O -0.857 6.857 11 C -0.441 4.441 12 C -0.552 4.552 13 H 0.098 0.902 14 C -0.124 4.124 15 N -0.530 5.530 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.188 1.188 19 H -0.210 1.210 20 C -0.123 4.123 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.004 0.985 13.081 18.471 hybrid contribution 1.728 2.615 0.817 3.239 sum -11.276 3.601 13.898 18.256 Atomic orbital electron populations 1.21842 0.95496 1.01801 1.01342 1.21122 0.94924 0.99567 0.95241 0.91760 1.21570 0.95704 1.00632 0.96948 1.21533 0.95533 1.00626 0.97834 1.21247 1.00721 0.99237 0.92053 1.27693 1.02256 1.09095 1.14750 0.90250 1.69861 0.91867 1.13498 0.82132 1.93021 1.80786 1.72774 1.39091 1.25404 1.13082 1.01550 1.04051 1.20283 0.92709 1.38034 1.04125 0.90164 1.24948 0.97621 0.94153 0.95720 1.69884 1.10725 1.42196 1.30148 0.86748 0.79996 0.79208 0.83238 1.20402 1.18774 1.20966 1.21190 0.92288 1.01171 0.97608 0.93029 0.92816 0.92517 0.91710 0.92626 0.92035 0.92562 0.90482 0.91158 0.90880 0.94845 0.92311 0.91949 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.09 -1.00 2.72 -90.62 -0.25 -1.24 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -1.12 5.20 -26.73 -0.14 -1.25 16 5 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 6 C -0.09 -1.20 4.95 -26.73 -0.13 -1.33 16 7 C -0.42 -6.38 2.71 -26.70 -0.07 -6.45 16 8 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 9 S 1.22 23.41 12.58 -107.50 -1.35 22.06 16 10 O -0.86 -21.95 18.14 -35.23 -0.64 -22.59 16 11 C -0.30 -6.91 4.15 36.01 0.15 -6.77 16 12 C -0.51 -14.53 9.68 -34.44 -0.33 -14.87 16 13 H 0.08 2.45 7.96 -52.49 -0.42 2.04 16 14 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 15 N -0.89 -27.20 13.96 55.43 0.77 -26.42 16 16 Si 0.88 21.36 27.46 -169.99 -4.67 16.69 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.26 -5.89 6.55 56.52 0.37 -5.52 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C -0.08 -1.10 4.49 -26.70 -0.12 -1.22 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 30 H 0.07 1.50 5.97 -51.92 -0.31 1.19 16 31 H 0.03 0.80 7.56 -51.92 -0.39 0.41 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -34.75 281.42 -8.15 -42.91 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.70 Total: -3.45 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: -0.81 Total: -33.43 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.64 Total: -22.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 23.41 SS G_CDS: -1.35 Total: 22.06 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.75 -8.15 -42.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.384 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds