Wall clock time and date at job start Mon Mar 30 2020 03:02:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30627 * 1
3 3 Si 1.86798 * 120.00528 * 2 1
4 4 H 1.48500 * 109.46907 * 274.98755 * 3 2 1
5 5 H 1.48502 * 109.46753 * 34.98742 * 3 2 1
6 6 H 1.48501 * 109.46974 * 154.98648 * 3 2 1
7 7 C 1.40149 * 119.99563 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99690 * 185.95628 * 7 2 1
9 9 C 1.41462 * 119.99897 * 5.95662 * 7 2 1
10 10 N 1.30130 * 123.06394 * 353.74551 * 9 7 2
11 11 C 1.46896 * 110.07429 * 180.26171 * 10 9 7
12 12 C 1.54103 * 104.24882 * 359.76171 * 11 10 9
13 13 N 1.37784 * 123.05643 * 173.57568 * 9 7 2
14 14 C 1.46503 * 125.84325 * 0.02562 * 13 9 7
15 15 C 1.50700 * 109.46702 * 269.68952 * 14 13 9
16 16 C 1.38234 * 119.99911 * 90.00011 * 15 14 13
17 17 C 1.38238 * 119.99837 * 179.97438 * 16 15 14
18 18 C 1.38230 * 120.00422 * 0.09104 * 17 16 15
19 19 C 1.38234 * 119.99650 * 359.86590 * 18 17 16
20 20 C 1.38231 * 119.99937 * 269.97153 * 15 14 13
21 21 H 0.97005 * 119.99426 * 359.97438 * 1 2 3
22 22 H 1.09003 * 110.48234 * 241.06296 * 11 10 9
23 23 H 1.09006 * 110.58360 * 118.50634 * 11 10 9
24 24 H 1.08999 * 110.62042 * 241.49989 * 12 11 10
25 25 H 1.09003 * 110.62373 * 118.49287 * 12 11 10
26 26 H 1.08991 * 109.47282 * 149.69334 * 14 13 9
27 27 H 1.09003 * 109.47149 * 29.68746 * 14 13 9
28 28 H 1.08004 * 120.00329 * 359.69768 * 16 15 14
29 29 H 1.08008 * 119.99891 * 179.97438 * 17 16 15
30 30 H 1.08000 * 120.00368 * 179.97438 * 18 17 16
31 31 H 1.08004 * 120.00367 * 180.02562 * 19 18 17
32 32 H 1.07998 * 120.00115 * 0.02562 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2404 1.6176 0.0000
4 1 2.3825 2.1071 -1.3948
5 1 1.4946 2.6199 0.8028
6 1 3.5867 1.4118 0.5920
7 6 2.0069 -1.2138 -0.0005
8 1 3.0826 -1.2164 0.0965
9 6 1.3052 -2.4354 -0.1282
10 7 0.0061 -2.5112 -0.1301
11 6 -0.4171 -3.9107 -0.2719
12 6 0.9038 -4.6989 -0.3650
13 7 1.9351 -3.6532 -0.2653
14 6 3.3835 -3.8708 -0.2991
15 6 3.8690 -3.7991 -1.7239
16 6 4.2715 -2.5888 -2.2569
17 6 4.7173 -2.5232 -3.5637
18 6 4.7590 -3.6674 -4.3382
19 6 4.3574 -4.8778 -3.8049
20 6 3.9125 -4.9438 -2.4977
21 1 -0.4849 0.8401 0.0004
22 1 -1.0042 -4.0414 -1.1810
23 1 -0.9899 -4.2279 0.5996
24 1 0.9746 -5.2178 -1.3209
25 1 0.9899 -5.4030 0.4626
26 1 3.6130 -4.8530 0.1139
27 1 3.8803 -3.1024 0.2932
28 1 4.2333 -1.6937 -1.6537
29 1 5.0314 -1.5774 -3.9803
30 1 5.1070 -3.6160 -5.3593
31 1 4.3903 -5.7720 -4.4098
32 1 3.5981 -5.8893 -2.0813
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000204568855.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:25
Heat of formation + Delta-G solvation = 42.309834 kcal
Electronic energy + Delta-G solvation = -15688.022779 eV
Core-core repulsion = 13227.026700 eV
Total energy + Delta-G solvation = -2460.996079 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.46856 -39.41388 -35.17124 -34.36653 -31.72003 -31.00895 -30.81444 -27.22949
-26.45583 -23.45393 -22.70067 -22.00792 -21.07674 -18.06643 -17.64125 -17.13585
-16.44537 -16.11312 -15.90417 -15.73502 -14.79202 -14.27236 -14.17676 -14.11026
-13.48444 -13.21251 -13.00868 -12.72139 -12.65399 -12.53117 -12.29963 -12.08428
-11.81152 -11.62846 -11.53897 -10.52854 -9.74916 -9.70445 -9.40258 -8.20341
-8.14371 -6.52613 0.51038 0.59933 1.42691 1.44249 1.57623 2.30240
2.45051 2.74171 3.21422 3.58969 3.98828 4.03219 4.15029 4.23752
4.32997 4.37499 4.50541 4.60335 4.68016 4.81630 4.88021 4.90863
5.13709 5.20154 5.26536 5.27498 5.53828 5.63998 5.69256 5.83342
6.19517 6.25338 6.32700 6.35451 7.05996 7.61207 8.43355 8.73393
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.021342 B = 0.010621 C = 0.007788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1311.622268 B = 2635.761748 C = 3594.200103
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.787 5.787
2 C 0.034 3.966
3 Si 0.977 3.023
4 H -0.268 1.268
5 H -0.275 1.275
6 H -0.251 1.251
7 C -0.493 4.493
8 H 0.083 0.917
9 C 0.444 3.556
10 N -0.662 5.662
11 C 0.024 3.976
12 C 0.096 3.904
13 N -0.667 5.667
14 C 0.189 3.811
15 C -0.110 4.110
16 C -0.117 4.117
17 C -0.135 4.135
18 C -0.128 4.128
19 C -0.129 4.129
20 C -0.120 4.120
21 H 0.270 0.730
22 H 0.038 0.962
23 H 0.046 0.954
24 H 0.055 0.945
25 H 0.065 0.935
26 H 0.087 0.913
27 H 0.070 0.930
28 H 0.111 0.889
29 H 0.133 0.867
30 H 0.146 0.854
31 H 0.146 0.854
32 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.479 -6.520 -5.489 13.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.413 5.413
2 C -0.185 4.185
3 Si 0.798 3.202
4 H -0.193 1.193
5 H -0.200 1.200
6 H -0.175 1.175
7 C -0.532 4.532
8 H 0.101 0.899
9 C 0.190 3.810
10 N -0.399 5.399
11 C -0.107 4.107
12 C -0.029 4.029
13 N -0.392 5.392
14 C 0.065 3.935
15 C -0.112 4.112
16 C -0.136 4.136
17 C -0.153 4.153
18 C -0.146 4.146
19 C -0.147 4.147
20 C -0.138 4.138
21 H 0.080 0.920
22 H 0.056 0.944
23 H 0.064 0.936
24 H 0.073 0.927
25 H 0.083 0.917
26 H 0.105 0.895
27 H 0.088 0.912
28 H 0.129 0.871
29 H 0.151 0.849
30 H 0.163 0.837
31 H 0.164 0.836
32 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 9.519 -6.042 -5.404 12.503
hybrid contribution 0.339 0.094 0.011 0.352
sum 9.858 -5.948 -5.393 12.714
Atomic orbital electron populations
1.70202 1.08833 1.28047 1.34230 1.26665 0.95394 1.03834 0.92609
0.85285 0.79281 0.76767 0.78843 1.19345 1.20042 1.17456 1.19016
0.94120 0.88761 1.51347 0.89895 1.20264 0.88316 0.85762 0.86649
1.75542 1.09467 1.11177 1.43746 1.22828 0.96023 0.93559 0.98254
1.22181 0.89863 0.91041 0.99796 1.48595 1.04007 1.05364 1.81274
1.19928 0.79669 1.01800 0.92058 1.20611 0.98415 0.94085 0.98126
1.21294 0.98258 0.97477 0.96536 1.21406 1.00340 0.99645 0.93912
1.21439 1.00089 0.92460 1.00575 1.21424 0.99252 0.98833 0.95184
1.21221 0.99859 0.97869 0.94884 0.92023 0.94419 0.93621 0.92662
0.91679 0.89456 0.91189 0.87131 0.84896 0.83662 0.83639 0.85293
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -46.17 11.76 21.85 0.26 -45.92 16
2 C 0.03 1.85 5.49 85.34 0.47 2.32 16
3 Si 0.98 40.33 29.56 68.60 2.03 42.36 16
4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16
5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16
6 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16
7 C -0.49 -27.00 8.78 23.53 0.21 -26.80 16
8 H 0.08 4.20 5.86 -2.91 -0.02 4.18 16
9 C 0.44 24.71 7.35 134.72 0.99 25.70 16
10 N -0.66 -39.45 9.53 -342.90 -3.27 -42.72 16
11 C 0.02 1.20 8.03 86.68 0.70 1.89 16
12 C 0.10 3.97 7.74 86.62 0.67 4.65 16
13 N -0.67 -30.40 3.06 -705.05 -2.16 -32.56 16
14 C 0.19 6.98 6.02 85.63 0.52 7.49 16
15 C -0.11 -3.85 5.46 -19.87 -0.11 -3.96 16
16 C -0.12 -4.18 9.70 22.27 0.22 -3.96 16
17 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16
18 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16
19 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16
20 C -0.12 -3.53 9.70 22.27 0.22 -3.31 16
21 H 0.27 14.54 8.29 -92.70 -0.77 13.78 16
22 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16
24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16
26 H 0.09 2.67 8.08 -2.39 -0.02 2.65 16
27 H 0.07 2.66 6.92 -2.39 -0.02 2.65 16
28 H 0.11 4.26 6.99 -2.91 -0.02 4.24 16
29 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16
30 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16
31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16
32 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16
Total: -1.00 -68.78 274.59 2.51 -66.27
By element:
Atomic # 1 Polarization: 17.39 SS G_CDS: 1.11 Total: 18.49 kcal
Atomic # 6 Polarization: -10.46 SS G_CDS: 4.54 Total: -5.92 kcal
Atomic # 7 Polarization: -116.03 SS G_CDS: -5.17 Total: -121.20 kcal
Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal
Total: -68.78 2.51 -66.27 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000204568855.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.579 kcal
(2) G-P(sol) polarization free energy of solvation -68.778 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.310 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds