Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86798 * 120.00528 * 2 1 4 4 H 1.48500 * 109.46907 * 274.98755 * 3 2 1 5 5 H 1.48502 * 109.46753 * 34.98742 * 3 2 1 6 6 H 1.48501 * 109.46974 * 154.98648 * 3 2 1 7 7 C 1.40149 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99690 * 185.95628 * 7 2 1 9 9 C 1.41462 * 119.99897 * 5.95662 * 7 2 1 10 10 N 1.30130 * 123.06394 * 353.74551 * 9 7 2 11 11 C 1.46896 * 110.07429 * 180.26171 * 10 9 7 12 12 C 1.54103 * 104.24882 * 359.76171 * 11 10 9 13 13 N 1.37784 * 123.05643 * 173.57568 * 9 7 2 14 14 C 1.46503 * 125.84325 * 0.02562 * 13 9 7 15 15 C 1.50700 * 109.46702 * 269.68952 * 14 13 9 16 16 C 1.38234 * 119.99911 * 90.00011 * 15 14 13 17 17 C 1.38238 * 119.99837 * 179.97438 * 16 15 14 18 18 C 1.38230 * 120.00422 * 0.09104 * 17 16 15 19 19 C 1.38234 * 119.99650 * 359.86590 * 18 17 16 20 20 C 1.38231 * 119.99937 * 269.97153 * 15 14 13 21 21 H 0.97005 * 119.99426 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.48234 * 241.06296 * 11 10 9 23 23 H 1.09006 * 110.58360 * 118.50634 * 11 10 9 24 24 H 1.08999 * 110.62042 * 241.49989 * 12 11 10 25 25 H 1.09003 * 110.62373 * 118.49287 * 12 11 10 26 26 H 1.08991 * 109.47282 * 149.69334 * 14 13 9 27 27 H 1.09003 * 109.47149 * 29.68746 * 14 13 9 28 28 H 1.08004 * 120.00329 * 359.69768 * 16 15 14 29 29 H 1.08008 * 119.99891 * 179.97438 * 17 16 15 30 30 H 1.08000 * 120.00368 * 179.97438 * 18 17 16 31 31 H 1.08004 * 120.00367 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.00115 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4946 2.6199 0.8028 6 1 3.5867 1.4118 0.5920 7 6 2.0069 -1.2138 -0.0005 8 1 3.0826 -1.2164 0.0965 9 6 1.3052 -2.4354 -0.1282 10 7 0.0061 -2.5112 -0.1301 11 6 -0.4171 -3.9107 -0.2719 12 6 0.9038 -4.6989 -0.3650 13 7 1.9351 -3.6532 -0.2653 14 6 3.3835 -3.8708 -0.2991 15 6 3.8690 -3.7991 -1.7239 16 6 4.2715 -2.5888 -2.2569 17 6 4.7173 -2.5232 -3.5637 18 6 4.7590 -3.6674 -4.3382 19 6 4.3574 -4.8778 -3.8049 20 6 3.9125 -4.9438 -2.4977 21 1 -0.4849 0.8401 0.0004 22 1 -1.0042 -4.0414 -1.1810 23 1 -0.9899 -4.2279 0.5996 24 1 0.9746 -5.2178 -1.3209 25 1 0.9899 -5.4030 0.4626 26 1 3.6130 -4.8530 0.1139 27 1 3.8803 -3.1024 0.2932 28 1 4.2333 -1.6937 -1.6537 29 1 5.0314 -1.5774 -3.9803 30 1 5.1070 -3.6160 -5.3593 31 1 4.3903 -5.7720 -4.4098 32 1 3.5981 -5.8893 -2.0813 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204568855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = 42.309834 kcal Electronic energy + Delta-G solvation = -15688.022779 eV Core-core repulsion = 13227.026700 eV Total energy + Delta-G solvation = -2460.996079 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46856 -39.41388 -35.17124 -34.36653 -31.72003 -31.00895 -30.81444 -27.22949 -26.45583 -23.45393 -22.70067 -22.00792 -21.07674 -18.06643 -17.64125 -17.13585 -16.44537 -16.11312 -15.90417 -15.73502 -14.79202 -14.27236 -14.17676 -14.11026 -13.48444 -13.21251 -13.00868 -12.72139 -12.65399 -12.53117 -12.29963 -12.08428 -11.81152 -11.62846 -11.53897 -10.52854 -9.74916 -9.70445 -9.40258 -8.20341 -8.14371 -6.52613 0.51038 0.59933 1.42691 1.44249 1.57623 2.30240 2.45051 2.74171 3.21422 3.58969 3.98828 4.03219 4.15029 4.23752 4.32997 4.37499 4.50541 4.60335 4.68016 4.81630 4.88021 4.90863 5.13709 5.20154 5.26536 5.27498 5.53828 5.63998 5.69256 5.83342 6.19517 6.25338 6.32700 6.35451 7.05996 7.61207 8.43355 8.73393 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.010621 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.622268 B = 2635.761748 C = 3594.200103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.034 3.966 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.444 3.556 10 N -0.662 5.662 11 C 0.024 3.976 12 C 0.096 3.904 13 N -0.667 5.667 14 C 0.189 3.811 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.135 4.135 18 C -0.128 4.128 19 C -0.129 4.129 20 C -0.120 4.120 21 H 0.270 0.730 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 -6.520 -5.489 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.532 4.532 8 H 0.101 0.899 9 C 0.190 3.810 10 N -0.399 5.399 11 C -0.107 4.107 12 C -0.029 4.029 13 N -0.392 5.392 14 C 0.065 3.935 15 C -0.112 4.112 16 C -0.136 4.136 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.138 4.138 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.519 -6.042 -5.404 12.503 hybrid contribution 0.339 0.094 0.011 0.352 sum 9.858 -5.948 -5.393 12.714 Atomic orbital electron populations 1.70202 1.08833 1.28047 1.34230 1.26665 0.95394 1.03834 0.92609 0.85285 0.79281 0.76767 0.78843 1.19345 1.20042 1.17456 1.19016 0.94120 0.88761 1.51347 0.89895 1.20264 0.88316 0.85762 0.86649 1.75542 1.09467 1.11177 1.43746 1.22828 0.96023 0.93559 0.98254 1.22181 0.89863 0.91041 0.99796 1.48595 1.04007 1.05364 1.81274 1.19928 0.79669 1.01800 0.92058 1.20611 0.98415 0.94085 0.98126 1.21294 0.98258 0.97477 0.96536 1.21406 1.00340 0.99645 0.93912 1.21439 1.00089 0.92460 1.00575 1.21424 0.99252 0.98833 0.95184 1.21221 0.99859 0.97869 0.94884 0.92023 0.94419 0.93621 0.92662 0.91679 0.89456 0.91189 0.87131 0.84896 0.83662 0.83639 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.17 11.76 21.85 0.26 -45.92 16 2 C 0.03 1.85 5.49 85.34 0.47 2.32 16 3 Si 0.98 40.33 29.56 68.60 2.03 42.36 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -27.00 8.78 23.53 0.21 -26.80 16 8 H 0.08 4.20 5.86 -2.91 -0.02 4.18 16 9 C 0.44 24.71 7.35 134.72 0.99 25.70 16 10 N -0.66 -39.45 9.53 -342.90 -3.27 -42.72 16 11 C 0.02 1.20 8.03 86.68 0.70 1.89 16 12 C 0.10 3.97 7.74 86.62 0.67 4.65 16 13 N -0.67 -30.40 3.06 -705.05 -2.16 -32.56 16 14 C 0.19 6.98 6.02 85.63 0.52 7.49 16 15 C -0.11 -3.85 5.46 -19.87 -0.11 -3.96 16 16 C -0.12 -4.18 9.70 22.27 0.22 -3.96 16 17 C -0.14 -4.05 10.05 22.27 0.22 -3.83 16 18 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 19 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 20 C -0.12 -3.53 9.70 22.27 0.22 -3.31 16 21 H 0.27 14.54 8.29 -92.70 -0.77 13.78 16 22 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.09 2.67 8.08 -2.39 -0.02 2.65 16 27 H 0.07 2.66 6.92 -2.39 -0.02 2.65 16 28 H 0.11 4.26 6.99 -2.91 -0.02 4.24 16 29 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -68.78 274.59 2.51 -66.27 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.11 Total: 18.49 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.54 Total: -5.92 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -5.17 Total: -121.20 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -68.78 2.51 -66.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204568855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.579 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds