Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46489 * 126.49837 * 2 1 4 4 C 1.39628 * 134.03314 * 359.95307 * 3 2 1 5 5 C 1.36627 * 119.76439 * 180.02562 * 4 3 2 6 6 C 1.38833 * 120.52716 * 0.03844 * 5 4 3 7 7 C 1.37741 * 120.66701 * 359.97438 * 6 5 4 8 8 C 1.39125 * 119.78217 * 359.97438 * 7 6 5 9 9 N 1.37684 * 133.51123 * 179.97438 * 8 7 6 10 10 H 0.97001 * 125.06189 * 0.02898 * 9 8 7 11 11 C 1.34237 * 126.50243 * 180.02562 * 2 1 3 12 12 C 1.50698 * 125.03312 * 0.26119 * 11 2 1 13 13 H 1.08994 * 109.47271 * 39.72470 * 12 11 2 14 14 N 1.46907 * 109.46798 * 159.72317 * 12 11 2 15 15 C 1.50699 * 109.47318 * 279.72045 * 12 11 2 16 16 H 1.08003 * 120.00135 * 0.02562 * 15 12 11 17 17 C 1.37870 * 119.99903 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00316 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99960 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47533 * 89.99991 * 19 17 15 21 21 H 1.48510 * 109.47079 * 210.00043 * 19 17 15 22 22 H 1.48500 * 109.47073 * 329.99687 * 19 17 15 23 23 H 1.08997 * 109.47303 * 269.99919 * 1 2 3 24 24 H 1.09001 * 109.47223 * 30.00381 * 1 2 3 25 25 H 1.09005 * 109.46965 * 150.00050 * 1 2 3 26 26 H 1.07997 * 120.11619 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.73448 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.66559 * 180.02562 * 6 5 4 29 29 H 1.08000 * 120.10962 * 179.97438 * 7 6 5 30 30 H 1.00896 * 111.00100 * 296.04737 * 14 12 11 31 31 H 1.00902 * 110.99823 * 59.99826 * 14 12 11 32 32 H 0.97004 * 120.00219 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1486 2.5548 -0.0008 5 6 3.2069 3.4190 -0.0011 6 6 4.5095 2.9387 -0.0013 7 6 4.7588 1.5840 -0.0008 8 6 3.6963 0.6858 0.0005 9 7 3.6170 -0.6887 0.0009 10 1 4.3776 -1.2907 0.0006 11 6 2.3055 -1.0790 -0.0005 12 6 1.8282 -2.5084 -0.0067 13 1 0.9659 -2.6007 -0.6669 14 7 2.9073 -3.3828 -0.4856 15 6 1.4365 -2.9134 1.3909 16 1 1.5239 -2.2063 2.2026 17 6 0.9654 -4.1863 1.6334 18 7 0.8585 -5.0472 0.6450 19 14 0.4791 -4.6880 3.3658 20 1 -0.9576 -4.3828 3.5847 21 1 0.7081 -6.1447 3.5419 22 1 1.3003 -3.9356 4.3479 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.1380 2.9357 -0.0013 27 1 3.0287 4.4841 -0.0013 28 1 5.3357 3.6343 -0.0011 29 1 5.7757 1.2203 -0.0014 30 1 3.1440 -3.1736 -1.4438 31 1 3.7188 -3.3152 0.1103 32 1 0.5267 -5.9427 0.8155 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211776200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = 48.503375 kcal Electronic energy + Delta-G solvation = -15532.712162 eV Core-core repulsion = 13071.984655 eV Total energy + Delta-G solvation = -2460.727507 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79086 -36.85774 -34.12923 -32.45764 -31.45931 -29.64313 -28.46867 -26.48512 -25.46154 -22.96486 -21.66137 -20.29472 -18.50971 -17.17180 -16.58678 -15.76089 -14.96949 -14.49652 -14.21189 -13.92369 -13.73904 -13.46809 -12.58127 -12.42152 -12.21098 -11.97920 -11.70417 -11.37171 -11.18446 -10.95290 -10.86182 -10.71823 -10.37660 -9.96646 -9.37220 -9.00645 -8.51695 -7.65233 -7.36503 -6.92606 -5.96300 -4.12408 1.57471 2.02811 3.29832 3.34293 3.37226 3.45141 3.68092 4.31330 4.43508 5.11479 5.26459 5.31181 5.36238 5.63861 5.77310 5.81808 6.00988 6.14398 6.24067 6.31815 6.41504 6.48380 6.63839 6.71487 6.88242 7.02000 7.11480 7.28590 7.49380 7.69686 7.82518 8.00411 8.17190 8.46500 8.78341 9.00238 9.56907 11.07135 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.007144 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.146505 B = 3918.594047 C = 4102.874846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.199 4.199 3 C -0.093 4.093 4 C -0.078 4.078 5 C -0.156 4.156 6 C -0.118 4.118 7 C -0.130 4.130 8 C 0.085 3.915 9 N -0.593 5.593 10 H 0.407 0.593 11 C 0.100 3.900 12 C 0.278 3.722 13 H 0.065 0.935 14 N -0.813 5.813 15 C -0.530 4.530 16 H 0.056 0.944 17 C 0.085 3.915 18 N -0.846 5.846 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.301 0.699 31 H 0.315 0.685 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 11.036 -2.187 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.205 4.205 3 C -0.098 4.098 4 C -0.097 4.097 5 C -0.176 4.176 6 C -0.137 4.137 7 C -0.151 4.151 8 C -0.022 4.022 9 N -0.196 5.196 10 H 0.244 0.756 11 C -0.010 4.010 12 C 0.167 3.833 13 H 0.083 0.917 14 N -0.339 5.339 15 C -0.569 4.569 16 H 0.074 0.926 17 C -0.122 4.122 18 N -0.481 5.481 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.936 10.101 -2.124 11.047 hybrid contribution 0.832 0.329 0.924 1.286 sum 4.768 10.430 -1.200 11.531 Atomic orbital electron populations 1.19923 0.89838 1.00870 1.01286 1.19935 0.95200 0.89611 1.15761 1.19266 0.92299 0.93231 1.05020 1.20196 0.98635 0.91183 0.99640 1.20469 0.92586 0.98847 1.05662 1.20600 0.96636 0.93960 1.02533 1.19937 0.96143 0.92295 1.06717 1.18263 0.95496 0.83651 1.04798 1.41775 1.07826 1.04448 1.65536 0.75645 1.22546 0.81380 1.00272 0.96830 1.18104 0.90711 0.76721 0.97732 0.91744 1.59079 1.11466 1.60240 1.03082 1.20754 1.46071 0.98009 0.92067 0.92589 1.24926 0.94476 0.96370 0.96454 1.70093 1.42464 1.04963 1.30538 0.86699 0.78959 0.77655 0.85203 1.20542 1.21231 1.20049 0.92356 0.93570 0.91650 0.86719 0.86855 0.86607 0.87019 0.88874 0.87353 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.17 36.01 0.37 -0.78 16 2 C -0.20 -4.08 6.31 -102.71 -0.65 -4.73 16 3 C -0.09 -1.77 6.35 -105.14 -0.67 -2.44 16 4 C -0.08 -1.27 10.05 -39.65 -0.40 -1.67 16 5 C -0.16 -2.22 9.97 -39.94 -0.40 -2.62 16 6 C -0.12 -1.64 10.01 -39.54 -0.40 -2.04 16 7 C -0.13 -2.00 10.08 -39.43 -0.40 -2.39 16 8 C 0.09 1.55 7.28 -83.99 -0.61 0.94 16 9 N -0.59 -10.96 5.89 -6.95 -0.04 -11.00 16 10 H 0.41 6.57 7.97 -40.82 -0.33 6.24 16 11 C 0.10 2.12 5.99 -81.77 -0.49 1.63 16 12 C 0.28 6.57 2.70 -70.01 -0.19 6.38 16 13 H 0.07 1.68 7.39 -51.93 -0.38 1.29 16 14 N -0.81 -17.88 8.32 -6.65 -0.06 -17.94 16 15 C -0.53 -14.04 8.71 -34.44 -0.30 -14.34 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.09 2.29 5.39 -17.82 -0.10 2.20 16 18 N -0.85 -23.74 12.77 55.43 0.71 -23.04 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.24 7.27 -51.93 -0.38 0.87 16 26 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.30 5.90 9.06 -39.29 -0.36 5.54 16 31 H 0.31 6.51 8.10 -39.29 -0.32 6.19 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 275.22 15.07 4.15 4.15 Total: -1.00 -29.26 275.22 -8.33 -37.59 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -3.84 Total: 14.18 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -4.23 Total: -19.86 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.61 Total: -51.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.26 -8.33 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211776200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.094 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds